PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6AG001250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 194aa MW: 21191.2 Da PI: 10.0065 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.8 | 1.2e-27 | 46 | 95 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqvtfskRr g+lKKA+EL vLCdaeva+i+fs++g+lyey+s TRIDC6AG001250.1 46 RIEDATSRQVTFSKRRSGLLKKAFELGVLCDAEVALIVFSPRGRLYEYAS 95 8***********************************************86 PP | |||||||
2 | K-box | 54.8 | 4.1e-19 | 119 | 183 | 6 | 70 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 ++++ +a + ++ e++ Lk +i+ ++ qR+l Ge+L+s+s eLq+Le qLeksl+ iR+kK+ TRIDC6AG001250.1 119 TVEQPAAGVQMCRSEATALKHKIDAIEAYQRKLSGEGLGSCSAHELQELELQLEKSLSCIRQKKS 183 444677888999****************************************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence |
MAPSSPPAAA VAAEGDEQQQ QIVVAAAAAA AAKKGGGKRG RREMRRIEDA TSRQVTFSKR 60 RSGLLKKAFE LGVLCDAEVA LIVFSPRGRL YEYASAPDLQ KTIDRYLNHT KGTSTNEKTV 120 EQPAAGVQMC RSEATALKHK IDAIEAYQRK LSGEGLGSCS AHELQELELQ LEKSLSCIRQ 180 KKSSNRKCWI KSWS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-47 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6AG001250.1 |