PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG052620.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 305aa MW: 34474.6 Da PI: 8.9699

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG052620.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++k +G g+W++ ++ g+ R++k+c++rw +yl TRIDC5BG052620.1 14 KGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	48.8	1.6e-15	67	153	1	47
TSSS-HHHHHHHHHHHHHTTTT.........................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.........................................tWktIartmgkgRtlkqcksrwqky 47 rg+++ eEdel+++++ +lG++ +W++Ia +++ gRt++++k++w+++ TRIDC5BG052620.1 67 RGNFSDEEDELIIKLHSLLGNKyvhrlihsiyssnertilcsalhawpcksialtvlflfderRWSLIAGRLP-GRTDNEIKNYWNTH 153 89*********************************************************************.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MGRSPCCEKA HTNKGAWTKE EDDRLTAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SDEEDELIIK LHSLLGNKYV HRLIHSIYSS NERTILCSAL HAWPCKSIAL 120 TVLFLFDERR WSLIAGRLPG RTDNEIKNYW NTHIRRKLTS RGIDPVTHRA INSDHAASNI 180 TISFEAAQRD DKGAVFRRDA EPTKVAAAAA AITHVDHHHR SNPHHQMEWG QGKPLKCPDL 240 NLDLCISPPS HEDPMVDTKP VVKREAVVGL CFSCSMGLPR SADCKCSSFM GLRTAMLDFR 300 SIEMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	3e-88	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG052620.1