PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG019490.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1221aa MW: 136883 Da PI: 7.3408

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG019490.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00048	1102	1125	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs++ +L H r TRIDC5BG019490.7 1102 FPCDieGCDMSFSSQQDLLLHKRD 1125 789999***************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1221 aa Download sequence
KRIRSDNNLT SCEPPWVSPK GHHEDVAFQT LNQKTTVLSP EVLLSAGVPC CRLVQNPGEF 60 VITFPGAYHC GFSHGFNCGE ATNIATPLWL QVAKEAAIRR ASTNCGPMIS HYQLLYELAL 120 SLSQREPKDF HTLPRSSRLR DKKKKDEGDT MVKEKFVGSV IENNNLLSIL LDKSSCIIVP 180 ETPFPPTSFP TMMEPELTVK QSLTGGHCSI SQQAVHNMSV DVALDKSIVV ENMSHSQSVT 240 EASLSAYNRR KLYETKYGEL GTAAFCLSPS KLQSGVTDKD KRGGLLDQGR LPCVQCGVLS 300 FACVAIIQPR EAAVQFVLSR EGISSSAKPG EVSESDGISN WITKNIEMVP QQGQASEALS 360 VSLAHVSDRC GQLYSRNNNG STSALGLLAS TYGSSDSEEE SNQGKDNQLL ETSVSFSSTV 420 QRQRSNSHLY EECCEAKTTT SLLKSIEDNS TTITRCGRDT DINHLAKLRE QGTTYDQCSV 480 YIDLANDLTI SGVKAYSDTH VTTAKSSIEP DVLTQLKYNN DSCRMHVFCL EHALGTWTQL 540 QKIGGANVML LCHPEYPRAE SAAKFIAEEL GLKPDWKDVA FEEATDDDIR RIQLALHDED 600 AEPASSDWAV KMGINIYYSA KQSKSPLYSK QIPYNSIIYE AFGQENPDNL TDYGRQRSGV 660 TKKRVAGCWC GKVWMSNQVH PFLVREHEEH NHAIVCSKVM LGANYHEIVY DEPSLTCNTM 720 VNCSPSKRIS RRKGRDSIEK SGARKKRCSA NDEATLHCSS IGMNSKTISD QPRNFDDHDK 780 HEGGKITEAP STQQYQQYTL QSMNMKSSSN KPKDYKGNRN FLDLYDEAND VDCWFNIDSG 840 DSTAIRHLED SRQQEFGTVK AKSPGKLQGN MRKSSKCKAG DDSLNGDKKV QKMNKKSISR 900 KQKDVEINTQ FREEYDEDNN WEEVPEGKDH DVKVESRAKT RSGEDDKRNN NSHELNDEYN 960 DMDCWHDIHR GDNATMGNLD NSPVQRLEAA EVKSGGKLHC CKRKSSKGKA KDNYSNGDEK 1020 LQMLNIESIS RKQKSDSQFD EGCGRDNALD SLLNDVDEAT RENCYEVREE EMDGMEVKPR 1080 GKVQTGKRKT SRCQAGDKAA KFPCDIEGCD MSFSSQQDLL LHKRDICPVK GCKKKFFCHK 1140 YLLQHRKVHM DERPLNCEWK GCKKTFKWPW ARTEHMRVHT GVRPYECMVP GCGQTFRFVS 1200 DFSRHKRKTG HSSGKKNKES T

Sequence ? help Back to Top

Protein Sequence Length: 1221 aa Download sequence

KRIRSDNNLT SCEPPWVSPK GHHEDVAFQT LNQKTTVLSP EVLLSAGVPC CRLVQNPGEF  60
VITFPGAYHC GFSHGFNCGE ATNIATPLWL QVAKEAAIRR ASTNCGPMIS HYQLLYELAL  120
SLSQREPKDF HTLPRSSRLR DKKKKDEGDT MVKEKFVGSV IENNNLLSIL LDKSSCIIVP  180
ETPFPPTSFP TMMEPELTVK QSLTGGHCSI SQQAVHNMSV DVALDKSIVV ENMSHSQSVT  240
EASLSAYNRR KLYETKYGEL GTAAFCLSPS KLQSGVTDKD KRGGLLDQGR LPCVQCGVLS  300
FACVAIIQPR EAAVQFVLSR EGISSSAKPG EVSESDGISN WITKNIEMVP QQGQASEALS  360
VSLAHVSDRC GQLYSRNNNG STSALGLLAS TYGSSDSEEE SNQGKDNQLL ETSVSFSSTV  420
QRQRSNSHLY EECCEAKTTT SLLKSIEDNS TTITRCGRDT DINHLAKLRE QGTTYDQCSV  480
YIDLANDLTI SGVKAYSDTH VTTAKSSIEP DVLTQLKYNN DSCRMHVFCL EHALGTWTQL  540
QKIGGANVML LCHPEYPRAE SAAKFIAEEL GLKPDWKDVA FEEATDDDIR RIQLALHDED  600
AEPASSDWAV KMGINIYYSA KQSKSPLYSK QIPYNSIIYE AFGQENPDNL TDYGRQRSGV  660
TKKRVAGCWC GKVWMSNQVH PFLVREHEEH NHAIVCSKVM LGANYHEIVY DEPSLTCNTM  720
VNCSPSKRIS RRKGRDSIEK SGARKKRCSA NDEATLHCSS IGMNSKTISD QPRNFDDHDK  780
HEGGKITEAP STQQYQQYTL QSMNMKSSSN KPKDYKGNRN FLDLYDEAND VDCWFNIDSG  840
DSTAIRHLED SRQQEFGTVK AKSPGKLQGN MRKSSKCKAG DDSLNGDKKV QKMNKKSISR  900
KQKDVEINTQ FREEYDEDNN WEEVPEGKDH DVKVESRAKT RSGEDDKRNN NSHELNDEYN  960
DMDCWHDIHR GDNATMGNLD NSPVQRLEAA EVKSGGKLHC CKRKSSKGKA KDNYSNGDEK  1020
LQMLNIESIS RKQKSDSQFD EGCGRDNALD SLLNDVDEAT RENCYEVREE EMDGMEVKPR  1080
GKVQTGKRKT SRCQAGDKAA KFPCDIEGCD MSFSSQQDLL LHKRDICPVK GCKKKFFCHK  1140
YLLQHRKVHM DERPLNCEWK GCKKTFKWPW ARTEHMRVHT GVRPYECMVP GCGQTFRFVS  1200
DFSRHKRKTG HSSGKKNKES T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	RDKKKKD
2	731	747	RRKGRDSIEKSGARKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-124	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG019490.7