PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG018910.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 508aa MW: 56001.3 Da PI: 8.4214 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30 | 8.8e-10 | 118 | 140 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5BG018910.9 118 PDCTYYLKFGTCRFGMKCKFNHP 140 89********************8 PP | |||||||
2 | zf-CCCH | 26.5 | 1.1e-08 | 217 | 239 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5BG018910.9 217 QEECKYYSTPGGCKFGESCRYLH 239 699*******************9 PP | |||||||
3 | zf-CCCH | 29.2 | 1.6e-09 | 266 | 288 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5BG018910.9 266 KECPYYMRIGSCKFATNCRFHHP 288 79********************9 PP | |||||||
4 | zf-CCCH | 20.8 | 6.6e-07 | 411 | 437 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ TRIDC5BG018910.9 411 PGQPECQHFVKSGFCKFKAKCKYHHPR 437 5789*********************96 PP | |||||||
5 | zf-CCCH | 26.3 | 1.3e-08 | 458 | 483 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ TRIDC5BG018910.9 458 DQPVCTYYERYGVCKFGPACMYNHPF 483 6899********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence |
VAPPTCSRRR RCLSLSPRRP MADADAKAPP KSNLDADLIA SISPSSTSSG ARSAVAIESQ 60 FADLAISDEL PKPSGWGDDA VRGIAGSDEI TGEITGGKVQ PVATADSRPR FPQRHAEPDC 120 TYYLKFGTCR FGMKCKFNHP ARKKKNRVKE SGSSSIGSND ISNKAFPPDD DQGRMEAMQL 180 KIADETEKGF YLKKFKETEQ KVAKEKRKET VSEGSAQEEC KYYSTPGGCK FGESCRYLHY 240 EGKERKTEVA KVELNFLGLP LRPGGKECPY YMRIGSCKFA TNCRFHHPDP TNVVSRDPML 300 EHENGDIPQQ NVQASSQLNV PVWPADQRAL NEHCAPFLAP ASSYSAGMIP PRGMYPSPEW 360 SGYHQVPLGP YYPPGISFHH FPAPPVNHPM YRGADVPGHQ ELPSDEYPER PGQPECQHFV 420 KSGFCKFKAK CKYHHPRSLV PPPTAGALSP LGLPLRPDQP VCTYYERYGV CKFGPACMYN 480 HPFNFGHPVS AAGPPLSAQY LTSGNYTV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.2 | 8e-73 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG018910.9 |