PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG018910.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 334aa MW: 37413.5 Da PI: 7.9915 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.6e-09 | 43 | 65 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5BG018910.8 43 QEECKYYSTPGGCKFGESCRYLH 65 699*******************9 PP | |||||||
2 | zf-CCCH | 29.9 | 9.6e-10 | 92 | 114 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5BG018910.8 92 KECPYYMRIGSCKFATNCRFHHP 114 79********************9 PP | |||||||
3 | zf-CCCH | 21.6 | 3.9e-07 | 237 | 263 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ TRIDC5BG018910.8 237 PGQPECQHFVKSGFCKFKAKCKYHHPR 263 5789*********************96 PP | |||||||
4 | zf-CCCH | 27 | 7.5e-09 | 284 | 309 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ TRIDC5BG018910.8 284 DQPVCTYYERYGVCKFGPACMYNHPF 309 6899********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence |
MEAMQLKIAD ETEKGFYLKK FKETEQKVAK EKRKETVSEG SAQEECKYYS TPGGCKFGES 60 CRYLHYEGKE RKTEVAKVEL NFLGLPLRPG GKECPYYMRI GSCKFATNCR FHHPDPTNVV 120 SRDPMLEHEN GDIPQQNVQA SSQLNVPVWP ADQRALNEHC APFLAPASSY SAGMIPPRGM 180 YPSPEWSGYH QVPLGPYYPP GISFHHFPAP PVNHPMYRGA DVPGHQELPS DEYPERPGQP 240 ECQHFVKSGF CKFKAKCKYH HPRSLVPPPT AGALSPLGLP LRPDQPVCTY YERYGVCKFG 300 PACMYNHPFN FGHPVSAAGP PLSAQYLTSG NYTV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 9e-65 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG018910.8 |