PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG018910.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 360aa MW: 40632.6 Da PI: 8.6939

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG018910.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.1	7.2e-09	69	91	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5BG018910.5 69 QEECKYYSTPGGCKFGESCRYLH 91 699*******************9 PP
2	zf-CCCH	29.8	1.1e-09	118	140	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5BG018910.5 118 KECPYYMRIGSCKFATNCRFHHP 140 79********************9 PP
3	zf-CCCH	21.4	4.3e-07	263	289	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ TRIDC5BG018910.5 263 PGQPECQHFVKSGFCKFKAKCKYHHPR 289 5789*********************96 PP
4	zf-CCCH	26.9	8.2e-09	310	335	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ TRIDC5BG018910.5 310 DQPVCTYYERYGVCKFGPACMYNHPF 335 6899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MIRLLKKNMK ILFQIFQLKS ICWKGRMEAM QLKIADETEK GFYLKKFKET EQKVAKEKRK 60 ETVSEGSAQE ECKYYSTPGG CKFGESCRYL HYEGKERKTE VAKVELNFLG LPLRPGGKEC 120 PYYMRIGSCK FATNCRFHHP DPTNVVSRDP MLEHENGDIP QQNVQASSQL NVPVWPADQR 180 ALNEHCAPFL APASSYSAGM IPPRGMYPSP EWSGYHQVPL GPYYPPGISF HHFPAPPVNH 240 PMYRGADVPG HQELPSDEYP ERPGQPECQH FVKSGFCKFK AKCKYHHPRS LVPPPTAGAL 300 SPLGLPLRPD QPVCTYYERY GVCKFGPACM YNHPFNFGHP VSAAGPPLSA QYLTSGNYTV

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MIRLLKKNMK ILFQIFQLKS ICWKGRMEAM QLKIADETEK GFYLKKFKET EQKVAKEKRK  60
ETVSEGSAQE ECKYYSTPGG CKFGESCRYL HYEGKERKTE VAKVELNFLG LPLRPGGKEC  120
PYYMRIGSCK FATNCRFHHP DPTNVVSRDP MLEHENGDIP QQNVQASSQL NVPVWPADQR  180
ALNEHCAPFL APASSYSAGM IPPRGMYPSP EWSGYHQVPL GPYYPPGISF HHFPAPPVNH  240
PMYRGADVPG HQELPSDEYP ERPGQPECQH FVKSGFCKFK AKCKYHHPRS LVPPPTAGAL  300
SPLGLPLRPD QPVCTYYERY GVCKFGPACM YNHPFNFGHP VSAAGPPLSA QYLTSGNYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	2e-64	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG018910.5