PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG018910.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 521aa MW: 57554.1 Da PI: 8.4993

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG018910.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	9.1e-10	130	152	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5BG018910.3 130 PDCTYYLKFGTCRFGMKCKFNHP 152 89********************8 PP
2	zf-CCCH	26.5	1.1e-08	230	252	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5BG018910.3 230 QEECKYYSTPGGCKFGESCRYLH 252 699*******************9 PP
3	zf-CCCH	29.1	1.7e-09	279	301	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5BG018910.3 279 KECPYYMRIGSCKFATNCRFHHP 301 79********************9 PP
4	zf-CCCH	20.8	6.8e-07	424	450	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ TRIDC5BG018910.3 424 PGQPECQHFVKSGFCKFKAKCKYHHPR 450 5789*********************96 PP
5	zf-CCCH	26.3	1.3e-08	471	496	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ TRIDC5BG018910.3 471 DQPVCTYYERYGVCKFGPACMYNHPF 496 6899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
HTLDKGFSFF PFVAPPTCSR RRRCLSLSPR RPMADADAKA PPKSNLDADL IASISPSSTS 60 SGARSAVAIE SQFADLAISD ELPKPSGWGD DAVRGIAGSD EITGEITGGK VQPVATADSR 120 PRFPQRHAEP DCTYYLKFGT CRFGMKCKFN HPARKKKNRV KESGSSSIGS NDISNKAFPP 180 DDDQKGRMEA MQLKIADETE KGFYLKKFKE TEQKVAKEKR KETVSEGSAQ EECKYYSTPG 240 GCKFGESCRY LHYEGKERKT EVAKVELNFL GLPLRPGGKE CPYYMRIGSC KFATNCRFHH 300 PDPTNVVSRD PMLEHENGDI PQQNVQASSQ LNVPVWPADQ RALNEHCAPF LAPASSYSAG 360 MIPPRGMYPS PEWSGYHQVP LGPYYPPGIS FHHFPAPPVN HPMYRGADVP GHQELPSDEY 420 PERPGQPECQ HFVKSGFCKF KAKCKYHHPR SLVPPPTAGA LSPLGLPLRP DQPVCTYYER 480 YGVCKFGPAC MYNHPFNFGH PVSAAGPPLS AQYLTSGNYT V

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

HTLDKGFSFF PFVAPPTCSR RRRCLSLSPR RPMADADAKA PPKSNLDADL IASISPSSTS  60
SGARSAVAIE SQFADLAISD ELPKPSGWGD DAVRGIAGSD EITGEITGGK VQPVATADSR  120
PRFPQRHAEP DCTYYLKFGT CRFGMKCKFN HPARKKKNRV KESGSSSIGS NDISNKAFPP  180
DDDQKGRMEA MQLKIADETE KGFYLKKFKE TEQKVAKEKR KETVSEGSAQ EECKYYSTPG  240
GCKFGESCRY LHYEGKERKT EVAKVELNFL GLPLRPGGKE CPYYMRIGSC KFATNCRFHH  300
PDPTNVVSRD PMLEHENGDI PQQNVQASSQ LNVPVWPADQ RALNEHCAPF LAPASSYSAG  360
MIPPRGMYPS PEWSGYHQVP LGPYYPPGIS FHHFPAPPVN HPMYRGADVP GHQELPSDEY  420
PERPGQPECQ HFVKSGFCKF KAKCKYHHPR SLVPPPTAGA LSPLGLPLRP DQPVCTYYER  480
YGVCKFGPAC MYNHPFNFGH PVSAAGPPLS AQYLTSGNYT V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	2e-72	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG018910.3