PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG018910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 541aa MW: 59794.5 Da PI: 8.0778 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.9 | 9.5e-10 | 130 | 152 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5BG018910.1 130 PDCTYYLKFGTCRFGMKCKFNHP 152 89********************8 PP | |||||||
2 | zf-CCCH | 26.4 | 1.2e-08 | 250 | 272 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5BG018910.1 250 QEECKYYSTPGGCKFGESCRYLH 272 699*******************9 PP | |||||||
3 | zf-CCCH | 29.1 | 1.7e-09 | 299 | 321 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5BG018910.1 299 KECPYYMRIGSCKFATNCRFHHP 321 79********************9 PP | |||||||
4 | zf-CCCH | 20.7 | 7.1e-07 | 444 | 470 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ TRIDC5BG018910.1 444 PGQPECQHFVKSGFCKFKAKCKYHHPR 470 5789*********************96 PP | |||||||
5 | zf-CCCH | 26.2 | 1.4e-08 | 491 | 516 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ TRIDC5BG018910.1 491 DQPVCTYYERYGVCKFGPACMYNHPF 516 6899********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence |
HTLDKGFSFF PFVAPPTCSR RRRCLSLSPR RPMADADAKA PPKSNLDADL IASISPSSTS 60 SGARSAVAIE SQFADLAISD ELPKPSGWGD DAVRGIAGSD EITGEITGGK VQPVATADSR 120 PRFPQRHAEP DCTYYLKFGT CRFGMKCKFN HPARKKKNRV KESGSSSIGS NDISNKAFPP 180 DDDQTPKEEY EDPVPNISAE VDLLKGRMEA MQLKIADETE KGFYLKKFKE TEQKVAKEKR 240 KETVSEGSAQ EECKYYSTPG GCKFGESCRY LHYEGKERKT EVAKVELNFL GLPLRPGGKE 300 CPYYMRIGSC KFATNCRFHH PDPTNVVSRD PMLEHENGDI PQQNVQASSQ LNVPVWPADQ 360 RALNEHCAPF LAPASSYSAG MIPPRGMYPS PEWSGYHQVP LGPYYPPGIS FHHFPAPPVN 420 HPMYRGADVP GHQELPSDEY PERPGQPECQ HFVKSGFCKF KAKCKYHHPR SLVPPPTAGA 480 LSPLGLPLRP DQPVCTYYER YGVCKFGPAC MYNHPFNFGH PVSAAGPPLS AQYLTSGNYT 540 V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.2 | 3e-68 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG018910.1 |