PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG017440.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 515aa MW: 55166 Da PI: 7.2505

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG017440.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.7e-06	119	140	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f ++ C++Gd C +aHg TRIDC5BG017440.3 119 PCPEFKKGAGCRRGDMCEYAHG 140 8****88**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
GAPSAPTTVS RLLAAGADPT LLDHLHRRPS DLVALPPNSL PLKNHILSLL GARKEWPPDP 60 SLPDIKNGAY ASDDFRMYSF KVRACSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC 120 PEFKKGAGCR RGDMCEYAHG VFESWLHPAQ YRTRLCKDGV GCARRVCFFA HTPEELRPLY 180 VSTGSAVPSP RGAMEMAAMG MGLSSPGSSF TPPLSPSGGG SGMAWPQPNL PALCLPGSAG 240 NLHLSRLRTS LSARAMAVDE LLASGDYDNH LGSPASVRSA RGKALVPSNL DELFSAEMAA 300 SHSPRYADQG GAAFSPTHKA AFLNQFQQHQ SLLSPRAAAT PEPVSPMSSR LLAALAQREK 360 MQQQTLRSMS SRDLGSSAPL LVGSPVVGSS WSKWGLPSGT PDWGADNDEL GRLKRSSSFD 420 LRSGANTDEP DLSWVNTLVK EPTPEKSSTN GTMATESIGI LGRSASHHES IAGDDSAILG 480 RTANHREGII DGEEDAATGV IGGWLEQLQL DEMVV

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

GAPSAPTTVS RLLAAGADPT LLDHLHRRPS DLVALPPNSL PLKNHILSLL GARKEWPPDP  60
SLPDIKNGAY ASDDFRMYSF KVRACSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC  120
PEFKKGAGCR RGDMCEYAHG VFESWLHPAQ YRTRLCKDGV GCARRVCFFA HTPEELRPLY  180
VSTGSAVPSP RGAMEMAAMG MGLSSPGSSF TPPLSPSGGG SGMAWPQPNL PALCLPGSAG  240
NLHLSRLRTS LSARAMAVDE LLASGDYDNH LGSPASVRSA RGKALVPSNL DELFSAEMAA  300
SHSPRYADQG GAAFSPTHKA AFLNQFQQHQ SLLSPRAAAT PEPVSPMSSR LLAALAQREK  360
MQQQTLRSMS SRDLGSSAPL LVGSPVVGSS WSKWGLPSGT PDWGADNDEL GRLKRSSSFD  420
LRSGANTDEP DLSWVNTLVK EPTPEKSSTN GTMATESIGI LGRSASHHES IAGDDSAILG  480
RTANHREGII DGEEDAATGV IGGWLEQLQL DEMVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-148	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG017440.3