PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC5AG061240.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 172aa MW: 19478.7 Da PI: 4.6364 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 122 | 141 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++t C++G rC++ H TRIDC5AG061240.5 122 CPFYLKTAACRFGVRCSRVH 141 ******************99 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 172 aa Download sequence |
AAAAAEEEAR AAEASTRDKY NDEHRDETED DGEWEYVEDG PAEIIWQGNE IILKKKKIKI 60 PKRTEDKPLS QEEERPTSNP LPPQSVPVAS QRREPSLSAR ELLEKVAQET PNFGTEQDKA 120 HCPFYLKTAA CRFGVRCSRV HFYPDKSCTL LMKNMYNGPG LVLEQDEGLE VC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10320.1 | 3e-53 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC5AG061240.5 |