PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G10320.1
Common NameF14N23.20
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 757aa    MW: 89065.1 Da    PI: 6.8983
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G10320.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-06246265625
                  -SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                  C+f+++tG C++G rC++ H
  AT1G10320.1 246 CPFHLKTGACRFGQRCSRVH 265
                  ******************99 PP
2zf-CCCH291.9e-09375402126
                  --S---SGGGGTS..--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                  +k ++C  ++++   tC++G+ C+F+H+
  AT1G10320.1 375 WKVAICGEYMKSRlkTCSRGSACNFIHC 402
                  899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.23240268IPR000571Zinc finger, CCCH-type
SMARTSM003563.4241267IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4245265IPR000571Zinc finger, CCCH-type
PRINTSPR018484.0E-37246265IPR009145U2 auxiliary factor small subunit
PRINTSPR018484.0E-37265285IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3305.7E-26271370IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd125401.35E-49273371No hitNo description
SMARTSM003612.8E-6294368IPR003954RNA recognition motif domain, eukaryote
SuperFamilySSF549283.63E-17301372IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018484.0E-37301316IPR009145U2 auxiliary factor small subunit
PROSITE profilePS501029.422309372IPR000504RNA recognition motif domain
PRINTSPR018484.0E-37329351IPR009145U2 auxiliary factor small subunit
PRINTSPR018484.0E-37356380IPR009145U2 auxiliary factor small subunit
SMARTSM003560.021374403IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.319374404IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7375402IPR000571Zinc finger, CCCH-type
PRINTSPR018484.0E-37394406IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE  60
EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW REAMEIKRKK EEEEEAKREE  120
EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS  180
VVQVDGHESS NAEFVLQISD RPTSNPLPPG SEASANYQNV SSAQQILESV AQEVPNFGTE  240
QDKAHCPFHL KTGACRFGQR CSRVHFYPNK SCTLLMKNMY NGPGITWEQD EGLEYTDEEA  300
ELCYEEFYED VHTEFLKYGE LVNFKVCRNG SFHLKGNVYV HYRSLESAIL AYQSINGRYF  360
AGKQVNCEFV NISRWKVAIC GEYMKSRLKT CSRGSACNFI HCFRNPGGDY EWADHDRPPP  420
RFWIHKMTSL FGYSDEKHME HESSGSLNDS ISDLSTDSHR QPSRRSRSRD HDHANVGSTP  480
SYRSRKYHGD TQDSTREDKL RRHAENCHDG DDSPSRDGSL EREMYKERRY AKDTLHRDSR  540
WSEHSPGHRV GRKRIHGRYS DDDSADGDDY GRRGTGHKRK PRRGTDSGVQ EQMDNEKDRK  600
THRSSRKHSR EGSSADKEEG HEHDRVHTVS DKSHRERSKH RHERSSSRYS HEEDSTESRH  660
HQHKESDKKR SVETSPVGYQ SDKDRDRSKQ RQRYKSDDPE SDQSRKGKRQ SEENSDRETH  720
KERRHRHRKR RRTQNSDDQN PKESEEVEEE IERWRPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A3e-312374019167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1727731RKRRR
2727732RKRRRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.515510.0flower| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible264454_at0.0
Expression AtlasAT1G10320-
AtGenExpressAT1G10320-
ATTED-IIAT1G10320-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G10320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G10320
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266840.0AK226684.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-54-F13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_172503.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ9SY740.0C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A1P8AVS10.0A0A1P8AVS1_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGAT1G10320.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59752025
Representative plantOGRP592666
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Wang BB,Brendel V
    Molecular characterization and phylogeny of U2AF35 homologs in plants.
    Plant Physiol., 2006. 140(2): p. 624-36
    [PMID:16407443]
  3. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  4. Waidmann S,Kusenda B,Mayerhofer J,Mechtler K,Jonak C
    A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis.
    Plant Cell, 2014. 26(11): p. 4328-44
    [PMID:25387881]
  5. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]