PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG025630.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 511aa MW: 58538 Da PI: 10.054

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG025630.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	311	351	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE ++ + v++ G++ Wkt ++++g +++ ++k+ w+ TRIDC5AG025630.1 311 KWTQEEYHKIRQFVEKNGTD-WKTLSEELG--KSEIHVKDTWRR 351 8*****************.****8..9*****9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
GLGRQKQTFD TNAGKEQAEK SGLTAVNSCS ERGDRADAEK VKKYRKKKEK KKDKAAETTG 60 QMQAFDTTVE NLGSEVYAER IKVKGRQSSS KSKKRKRKRQ DGELAANISG ADQIVAMARE 120 ANKRKKENSV VLKESSQIDN TKKGTSKIGN GSDKVSSDLS QYAFAGEEAN ADGKGDKKKK 180 KRKEGIEGGK REKEKAARSK NKGRRVTFAD SVVVFSIEGR DDEEGGSSGG SELVHGQRFT 240 LEEEATLMEA MRDYAEMKQL GEEGLEMIRR CRKYPELKGC WSDIGKSLPH RPHEAIYKRA 300 RILLTRSDER KWTQEEYHKI RQFVEKNGTD WKTLSEELGK SEIHVKDTWR RIKPKNLKKG 360 RWTQDEHQNL FDLVNLDLRL KAHQEKNPGH RKLRDNISWE AISDKLTSRN HKNCCLKWYV 420 TLASPLVKQG VWADIDDYRL VEALQKVDAV CIEDVDWESL LGHRSGEVCR QRWNQMVRGI 480 GSHRQKTFIE QVEVLSKRYC PEMIDYRESE N

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

GLGRQKQTFD TNAGKEQAEK SGLTAVNSCS ERGDRADAEK VKKYRKKKEK KKDKAAETTG  60
QMQAFDTTVE NLGSEVYAER IKVKGRQSSS KSKKRKRKRQ DGELAANISG ADQIVAMARE  120
ANKRKKENSV VLKESSQIDN TKKGTSKIGN GSDKVSSDLS QYAFAGEEAN ADGKGDKKKK  180
KRKEGIEGGK REKEKAARSK NKGRRVTFAD SVVVFSIEGR DDEEGGSSGG SELVHGQRFT  240
LEEEATLMEA MRDYAEMKQL GEEGLEMIRR CRKYPELKGC WSDIGKSLPH RPHEAIYKRA  300
RILLTRSDER KWTQEEYHKI RQFVEKNGTD WKTLSEELGK SEIHVKDTWR RIKPKNLKKG  360
RWTQDEHQNL FDLVNLDLRL KAHQEKNPGH RKLRDNISWE AISDKLTSRN HKNCCLKWYV  420
TLASPLVKQG VWADIDDYRL VEALQKVDAV CIEDVDWESL LGHRSGEVCR QRWNQMVRGI  480
GSHRQKTFIE QVEVLSKRYC PEMIDYRESE N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	50	RKKKEK
2	45	53	RKKKEKKKD
3	93	98	KKRKRK
4	93	99	KKRKRKR
5	95	125	RKRKRQDGELAANISGADQIVAMAREANKRK
6	96	126	RKRKRQDGELAANISGADQIVAMAREANKRK
7	123	147	KRKKENSVVLKESSQIDNTKKGTSK
8	177	183	KKRKRKR
9	178	183	KKKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-103	MYB_related family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG025630.1