PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5AG020500.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 242aa MW: 26612.1 Da PI: 9.1605 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.3 | 3.5e-10 | 115 | 137 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5AG020500.6 115 PDCTYYLKFGTCRFGMKCKFNHP 137 89********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
PTCSRRRRYL SLSPRRRMAD ADAKAPPKSN LDADLIASIS PSSNSSGARN AVAIESQFAD 60 LAISDELPKP SGWGDDAVLG IAGSDEITGE ITGGKVQPVA TADSRPRFPQ RHAEPDCTYY 120 LKFGTCRFGM KCKFNHPARK KKNRVKASGS SSSGSNDISN KAFPPDDDQT PKEEYEDLVP 180 NISAEVDLLK GRMEAMQLKI ADETEKGFYL KKFKETEQKV YKFLHFKLAP CSTGLIVPLQ 240 RP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 6e-11 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5AG020500.6 |