PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG020500.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 506aa MW: 55890.1 Da PI: 8.6159

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG020500.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	8.8e-10	115	137	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5AG020500.5 115 PDCTYYLKFGTCRFGMKCKFNHP 137 89********************8 PP
2	zf-CCCH	26.5	1.1e-08	215	237	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5AG020500.5 215 QEECKYYSTPGGCKFGESCRYLH 237 699*******************9 PP
3	zf-CCCH	29.2	1.6e-09	264	286	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5AG020500.5 264 KECPYYMRIGSCKFATNCRFHHP 286 79********************9 PP
4	zf-CCCH	19.2	2.2e-06	412	435	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++f ++G+Ck+ ++Ck++H++ TRIDC5AG020500.5 412 LECQHFVKSGFCKFKAKCKYHHPR 435 58********************96 PP
5	zf-CCCH	26	1.6e-08	457	481	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ r+G Ck+G+ C ++H++ TRIDC5AG020500.5 457 QPVCTYYERYGVCKFGPACMYNHPF 481 789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
PTCSRRRRYL SLSPRRRMAD ADAKAPPKSN LDADLIASIS PSSNSSGARN AVAIESQFAD 60 LAISDELPKP SGWGDDAVLG IAGSDEITGE ITGGKVQPVA TADSRPRFPQ RHAEPDCTYY 120 LKFGTCRFGM KCKFNHPARK KKNRVKASGS SSSGSNDISN KAFPPDDDQK GRMEAMQLKI 180 ADETEKGFYL KKFKETEQKV AKEKRKETVS EGSAQEECKY YSTPGGCKFG ESCRYLHYEG 240 KERKTEVAKV ELNFLGLPLR PGGKECPYYM RIGSCKFATN CRFHHPDPSN VVSRDPMLEH 300 ENGDIPQQNV QASSQLNVPV WSADQRALNE HCAPFLAPAS SYSAGMIPPR GMYPSPEWSG 360 YHQVPLGPYY PPGIAFHHFP TPPVNHPMYR GADVPGHQEL PSDEYPERPG QLECQHFVKS 420 GFCKFKAKCK YHHPRSLVPP PTAGALSPLG LPLRSDQPVC TYYERYGVCK FGPACMYNHP 480 FNFGHPVSAA GPPLSAQYLT SGNYTV

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

PTCSRRRRYL SLSPRRRMAD ADAKAPPKSN LDADLIASIS PSSNSSGARN AVAIESQFAD  60
LAISDELPKP SGWGDDAVLG IAGSDEITGE ITGGKVQPVA TADSRPRFPQ RHAEPDCTYY  120
LKFGTCRFGM KCKFNHPARK KKNRVKASGS SSSGSNDISN KAFPPDDDQK GRMEAMQLKI  180
ADETEKGFYL KKFKETEQKV AKEKRKETVS EGSAQEECKY YSTPGGCKFG ESCRYLHYEG  240
KERKTEVAKV ELNFLGLPLR PGGKECPYYM RIGSCKFATN CRFHHPDPSN VVSRDPMLEH  300
ENGDIPQQNV QASSQLNVPV WSADQRALNE HCAPFLAPAS SYSAGMIPPR GMYPSPEWSG  360
YHQVPLGPYY PPGIAFHHFP TPPVNHPMYR GADVPGHQEL PSDEYPERPG QLECQHFVKS  420
GFCKFKAKCK YHHPRSLVPP PTAGALSPLG LPLRSDQPVC TYYERYGVCK FGPACMYNHP  480
FNFGHPVSAA GPPLSAQYLT SGNYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	2e-69	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG020500.5