PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG020500.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 505aa MW: 55761.9 Da PI: 8.5372

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG020500.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	8.8e-10	115	137	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5AG020500.4 115 PDCTYYLKFGTCRFGMKCKFNHP 137 89********************8 PP
2	zf-CCCH	26.5	1.1e-08	214	236	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5AG020500.4 214 QEECKYYSTPGGCKFGESCRYLH 236 699*******************9 PP
3	zf-CCCH	29.2	1.6e-09	263	285	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5AG020500.4 263 KECPYYMRIGSCKFATNCRFHHP 285 79********************9 PP
4	zf-CCCH	19.2	2.2e-06	411	434	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++f ++G+Ck+ ++Ck++H++ TRIDC5AG020500.4 411 LECQHFVKSGFCKFKAKCKYHHPR 434 58********************96 PP
5	zf-CCCH	26	1.6e-08	456	480	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ r+G Ck+G+ C ++H++ TRIDC5AG020500.4 456 QPVCTYYERYGVCKFGPACMYNHPF 480 789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
PTCSRRRRYL SLSPRRRMAD ADAKAPPKSN LDADLIASIS PSSNSSGARN AVAIESQFAD 60 LAISDELPKP SGWGDDAVLG IAGSDEITGE ITGGKVQPVA TADSRPRFPQ RHAEPDCTYY 120 LKFGTCRFGM KCKFNHPARK KKNRVKASGS SSSGSNDISN KAFPPDDDQG RMEAMQLKIA 180 DETEKGFYLK KFKETEQKVA KEKRKETVSE GSAQEECKYY STPGGCKFGE SCRYLHYEGK 240 ERKTEVAKVE LNFLGLPLRP GGKECPYYMR IGSCKFATNC RFHHPDPSNV VSRDPMLEHE 300 NGDIPQQNVQ ASSQLNVPVW SADQRALNEH CAPFLAPASS YSAGMIPPRG MYPSPEWSGY 360 HQVPLGPYYP PGIAFHHFPT PPVNHPMYRG ADVPGHQELP SDEYPERPGQ LECQHFVKSG 420 FCKFKAKCKY HHPRSLVPPP TAGALSPLGL PLRSDQPVCT YYERYGVCKF GPACMYNHPF 480 NFGHPVSAAG PPLSAQYLTS GNYTV

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

PTCSRRRRYL SLSPRRRMAD ADAKAPPKSN LDADLIASIS PSSNSSGARN AVAIESQFAD  60
LAISDELPKP SGWGDDAVLG IAGSDEITGE ITGGKVQPVA TADSRPRFPQ RHAEPDCTYY  120
LKFGTCRFGM KCKFNHPARK KKNRVKASGS SSSGSNDISN KAFPPDDDQG RMEAMQLKIA  180
DETEKGFYLK KFKETEQKVA KEKRKETVSE GSAQEECKYY STPGGCKFGE SCRYLHYEGK  240
ERKTEVAKVE LNFLGLPLRP GGKECPYYMR IGSCKFATNC RFHHPDPSNV VSRDPMLEHE  300
NGDIPQQNVQ ASSQLNVPVW SADQRALNEH CAPFLAPASS YSAGMIPPRG MYPSPEWSGY  360
HQVPLGPYYP PGIAFHHFPT PPVNHPMYRG ADVPGHQELP SDEYPERPGQ LECQHFVKSG  420
FCKFKAKCKY HHPRSLVPPP TAGALSPLGL PLRSDQPVCT YYERYGVCKF GPACMYNHPF  480
NFGHPVSAAG PPLSAQYLTS GNYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	2e-69	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG020500.4