PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5AG020500.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 525aa MW: 58018.4 Da PI: 8.1021 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30 | 9.2e-10 | 115 | 137 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5AG020500.3 115 PDCTYYLKFGTCRFGMKCKFNHP 137 89********************8 PP | |||||||
2 | zf-CCCH | 26.5 | 1.1e-08 | 234 | 256 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5AG020500.3 234 QEECKYYSTPGGCKFGESCRYLH 256 699*******************9 PP | |||||||
3 | zf-CCCH | 29.1 | 1.7e-09 | 283 | 305 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5AG020500.3 283 KECPYYMRIGSCKFATNCRFHHP 305 79********************9 PP | |||||||
4 | zf-CCCH | 19.1 | 2.3e-06 | 431 | 454 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++f ++G+Ck+ ++Ck++H++ TRIDC5AG020500.3 431 LECQHFVKSGFCKFKAKCKYHHPR 454 58********************96 PP | |||||||
5 | zf-CCCH | 25.9 | 1.7e-08 | 476 | 500 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ r+G Ck+G+ C ++H++ TRIDC5AG020500.3 476 QPVCTYYERYGVCKFGPACMYNHPF 500 789********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence |
PTCSRRRRYL SLSPRRRMAD ADAKAPPKSN LDADLIASIS PSSNSSGARN AVAIESQFAD 60 LAISDELPKP SGWGDDAVLG IAGSDEITGE ITGGKVQPVA TADSRPRFPQ RHAEPDCTYY 120 LKFGTCRFGM KCKFNHPARK KKNRVKASGS SSSGSNDISN KAFPPDDDQT PKEEYEDLVP 180 NISAEVDLLG RMEAMQLKIA DETEKGFYLK KFKETEQKVA KEKRKETVSE GSAQEECKYY 240 STPGGCKFGE SCRYLHYEGK ERKTEVAKVE LNFLGLPLRP GGKECPYYMR IGSCKFATNC 300 RFHHPDPSNV VSRDPMLEHE NGDIPQQNVQ ASSQLNVPVW SADQRALNEH CAPFLAPASS 360 YSAGMIPPRG MYPSPEWSGY HQVPLGPYYP PGIAFHHFPT PPVNHPMYRG ADVPGHQELP 420 SDEYPERPGQ LECQHFVKSG FCKFKAKCKY HHPRSLVPPP TAGALSPLGL PLRSDQPVCT 480 YYERYGVCKF GPACMYNHPF NFGHPVSAAG PPLSAQYLTS GNYTV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.2 | 2e-67 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5AG020500.3 |