PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG020500.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 509aa MW: 56004 Da PI: 7.3449

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG020500.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	8.9e-10	98	120	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5AG020500.2 98 PDCTYYLKFGTCRFGMKCKFNHP 120 89********************8 PP
2	zf-CCCH	26.5	1.1e-08	218	240	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5AG020500.2 218 QEECKYYSTPGGCKFGESCRYLH 240 699*******************9 PP
3	zf-CCCH	29.2	1.6e-09	267	289	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5AG020500.2 267 KECPYYMRIGSCKFATNCRFHHP 289 79********************9 PP
4	zf-CCCH	19.2	2.2e-06	415	438	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++f ++G+Ck+ ++Ck++H++ TRIDC5AG020500.2 415 LECQHFVKSGFCKFKAKCKYHHPR 438 58********************96 PP
5	zf-CCCH	26	1.6e-08	460	484	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ r+G Ck+G+ C ++H++ TRIDC5AG020500.2 460 QPVCTYYERYGVCKFGPACMYNHPF 484 789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MADADAKAPP KSNLDADLIA SISPSSNSSG ARNAVAIESQ FADLAISDEL PKPSGWGDDA 60 VLGIAGSDEI TGEITGGKVQ PVATADSRPR FPQRHAEPDC TYYLKFGTCR FGMKCKFNHP 120 ARKKKNRVKA SGSSSSGSND ISNKAFPPDD DQTPKEEYED LVPNISAEVD LLKGRMEAMQ 180 LKIADETEKG FYLKKFKETE QKVAKEKRKE TVSEGSAQEE CKYYSTPGGC KFGESCRYLH 240 YEGKERKTEV AKVELNFLGL PLRPGGKECP YYMRIGSCKF ATNCRFHHPD PSNVVSRDPM 300 LEHENGDIPQ QNVQASSQLN VPVWSADQRA LNEHCAPFLA PASSYSAGMI PPRGMYPSPE 360 WSGYHQVPLG PYYPPGIAFH HFPTPPVNHP MYRGADVPGH QELPSDEYPE RPGQLECQHF 420 VKSGFCKFKA KCKYHHPRSL VPPPTAGALS PLGLPLRSDQ PVCTYYERYG VCKFGPACMY 480 NHPFNFGHPV SAAGPPLSAQ YLTSGNYTV

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MADADAKAPP KSNLDADLIA SISPSSNSSG ARNAVAIESQ FADLAISDEL PKPSGWGDDA  60
VLGIAGSDEI TGEITGGKVQ PVATADSRPR FPQRHAEPDC TYYLKFGTCR FGMKCKFNHP  120
ARKKKNRVKA SGSSSSGSND ISNKAFPPDD DQTPKEEYED LVPNISAEVD LLKGRMEAMQ  180
LKIADETEKG FYLKKFKETE QKVAKEKRKE TVSEGSAQEE CKYYSTPGGC KFGESCRYLH  240
YEGKERKTEV AKVELNFLGL PLRPGGKECP YYMRIGSCKF ATNCRFHHPD PSNVVSRDPM  300
LEHENGDIPQ QNVQASSQLN VPVWSADQRA LNEHCAPFLA PASSYSAGMI PPRGMYPSPE  360
WSGYHQVPLG PYYPPGIAFH HFPTPPVNHP MYRGADVPGH QELPSDEYPE RPGQLECQHF  420
VKSGFCKFKA KCKYHHPRSL VPPPTAGALS PLGLPLRSDQ PVCTYYERYG VCKFGPACMY  480
NHPFNFGHPV SAAGPPLSAQ YLTSGNYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	3e-60	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG020500.2