PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG020500.13

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 365aa MW: 40461.6 Da PI: 7.8459

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG020500.13	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.1	7.4e-09	74	96	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5AG020500.13 74 QEECKYYSTPGGCKFGESCRYLH 96 699*******************9 PP
2	zf-CCCH	29.7	1.1e-09	123	145	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5AG020500.13 123 KECPYYMRIGSCKFATNCRFHHP 145 79********************9 PP
3	zf-CCCH	19.7	1.5e-06	271	294	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++f ++G+Ck+ ++Ck++H++ TRIDC5AG020500.13 271 LECQHFVKSGFCKFKAKCKYHHPR 294 58********************96 PP
4	zf-CCCH	26.5	1.1e-08	316	340	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ r+G Ck+G+ C ++H++ TRIDC5AG020500.13 316 QPVCTYYERYGVCKFGPACMYNHPF 340 789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
FAAGVKASGS SSSGSNDISN KAFPPDDDQG RMEAMQLKIA DETEKGFYLK KFKETEQKVA 60 KEKRKETVSE GSAQEECKYY STPGGCKFGE SCRYLHYEGK ERKTEVAKVE LNFLGLPLRP 120 GGKECPYYMR IGSCKFATNC RFHHPDPSNV VSRDPMLEHE NGDIPQQNVQ ASSQLNVPVW 180 SADQRALNEH CAPFLAPASS YSAGMIPPRG MYPSPEWSGY HQVPLGPYYP PGIAFHHFPT 240 PPVNHPMYRG ADVPGHQELP SDEYPERPGQ LECQHFVKSG FCKFKAKCKY HHPRSLVPPP 300 TAGALSPLGL PLRSDQPVCT YYERYGVCKF GPACMYNHPF NFGHPVSAAG PPLSAQYLTS 360 GNYTV

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

FAAGVKASGS SSSGSNDISN KAFPPDDDQG RMEAMQLKIA DETEKGFYLK KFKETEQKVA  60
KEKRKETVSE GSAQEECKYY STPGGCKFGE SCRYLHYEGK ERKTEVAKVE LNFLGLPLRP  120
GGKECPYYMR IGSCKFATNC RFHHPDPSNV VSRDPMLEHE NGDIPQQNVQ ASSQLNVPVW  180
SADQRALNEH CAPFLAPASS YSAGMIPPRG MYPSPEWSGY HQVPLGPYYP PGIAFHHFPT  240
PPVNHPMYRG ADVPGHQELP SDEYPERPGQ LECQHFVKSG FCKFKAKCKY HHPRSLVPPP  300
TAGALSPLGL PLRSDQPVCT YYERYGVCKF GPACMYNHPF NFGHPVSAAG PPLSAQYLTS  360
GNYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	3e-61	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG020500.13