PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5AG020500.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 530aa MW: 58426.7 Da PI: 7.3627 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.9 | 9.3e-10 | 96 | 118 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5AG020500.12 96 PDCTYYLKFGTCRFGMKCKFNHP 118 89********************8 PP | |||||||
2 | zf-CCCH | 26.4 | 1.2e-08 | 239 | 261 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5AG020500.12 239 QEECKYYSTPGGCKFGESCRYLH 261 699*******************9 PP | |||||||
3 | zf-CCCH | 29.1 | 1.7e-09 | 288 | 310 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5AG020500.12 288 KECPYYMRIGSCKFATNCRFHHP 310 79********************9 PP | |||||||
4 | zf-CCCH | 19.1 | 2.3e-06 | 436 | 459 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++f ++G+Ck+ ++Ck++H++ TRIDC5AG020500.12 436 LECQHFVKSGFCKFKAKCKYHHPR 459 58********************96 PP | |||||||
5 | zf-CCCH | 25.9 | 1.7e-08 | 481 | 505 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ r+G Ck+G+ C ++H++ TRIDC5AG020500.12 481 QPVCTYYERYGVCKFGPACMYNHPF 505 789********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence |
DADAKAPPKS NLDADLIASI SPSSNSSGAR NAVAIESQFA DLAISDELPK PSGWGDDAVL 60 GIAGSDEITG EITGGKVQPV ATADSRPRFP QRHAEPDCTY YLKFGTCRFG MKCKFNHPAR 120 KKKNRVKASG SSSSGSNDIS NKAFPPDDDQ TPKEEYEDLV PNISAEVDLL GFVDKENTSN 180 LINLNRTSHE KGRMEAMQLK IADETEKGFY LKKFKETEQK ILKVAKEKRK ETVSEGSAQE 240 ECKYYSTPGG CKFGESCRYL HYEGKERKTE VAKVELNFLG LPLRPGGKEC PYYMRIGSCK 300 FATNCRFHHP DPSNVVSRDP MLEHENGDIP QQNVQASSQL NVPVWSADQR ALNEHCAPFL 360 APASSYSAGM IPPRGMYPSP EWSGYHQVPL GPYYPPGIAF HHFPTPPVNH PMYRGADVPG 420 HQELPSDEYP ERPGQLECQH FVKSGFCKFK AKCKYHHPRS LVPPPTAGAL SPLGLPLRSD 480 QPVCTYYERY GVCKFGPACM YNHPFNFGHP VSAAGPPLSA QYLTSGNYTV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 2e-62 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5AG020500.12 |