PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG020500.11

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 382aa MW: 42364.6 Da PI: 8.0896

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG020500.11	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.5	6.3e-10	111	133	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5AG020500.11 111 PDCTYYLKFGTCRFGMKCKFNHP 133 89********************8 PP
2	zf-CCCH	27	7.8e-09	231	253	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5AG020500.11 231 QEECKYYSTPGGCKFGESCRYLH 253 699*******************9 PP
3	zf-CCCH	29.7	1.1e-09	280	302	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5AG020500.11 280 KECPYYMRIGSCKFATNCRFHHP 302 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
RRRRYLSLSP RRRMADADAK APPKSNLDAD LIASISPSSN SSGARNAVAI ESQFADLAIS 60 DELPKPSGWG DDAVLGIAGS DEITGEITGG KVQPVATADS RPRFPQRHAE PDCTYYLKFG 120 TCRFGMKCKF NHPARKKKNR VKASGSSSSG SNDISNKAFP PDDDQTPKEE YEDLVPNISA 180 EVDLLKGRME AMQLKIADET EKGFYLKKFK ETEQKVAKEK RKETVSEGSA QEECKYYSTP 240 GGCKFGESCR YLHYEGKERK TEVAKVELNF LGLPLRPGGK ECPYYMRIGS CKFATNCRFH 300 HPDPSNVVSR DPMLEHENGD IPQQNVQASS QLNVPVWSAD QRALNEHCAP FLAPASSYSA 360 GMIPPRGMYP SPEWSGYHQV FH

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

RRRRYLSLSP RRRMADADAK APPKSNLDAD LIASISPSSN SSGARNAVAI ESQFADLAIS  60
DELPKPSGWG DDAVLGIAGS DEITGEITGG KVQPVATADS RPRFPQRHAE PDCTYYLKFG  120
TCRFGMKCKF NHPARKKKNR VKASGSSSSG SNDISNKAFP PDDDQTPKEE YEDLVPNISA  180
EVDLLKGRME AMQLKIADET EKGFYLKKFK ETEQKVAKEK RKETVSEGSA QEECKYYSTP  240
GGCKFGESCR YLHYEGKERK TEVAKVELNF LGLPLRPGGK ECPYYMRIGS CKFATNCRFH  300
HPDPSNVVSR DPMLEHENGD IPQQNVQASS QLNVPVWSAD QRALNEHCAP FLAPASSYSA  360
GMIPPRGMYP SPEWSGYHQV FH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	8e-28	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG020500.11