PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5AG020500.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 511aa MW: 56470.5 Da PI: 8.1021 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30 | 8.9e-10 | 113 | 135 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5AG020500.10 113 PDCTYYLKFGTCRFGMKCKFNHP 135 89********************8 PP | |||||||
2 | zf-CCCH | 26.5 | 1.1e-08 | 232 | 254 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5AG020500.10 232 QEECKYYSTPGGCKFGESCRYLH 254 699*******************9 PP | |||||||
3 | zf-CCCH | 28.6 | 2.4e-09 | 269 | 291 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5AG020500.10 269 KECPYYMRIGSCKFATNCRFHHP 291 68********************9 PP | |||||||
4 | zf-CCCH | 19.2 | 2.2e-06 | 417 | 440 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++f ++G+Ck+ ++Ck++H++ TRIDC5AG020500.10 417 LECQHFVKSGFCKFKAKCKYHHPR 440 58********************96 PP | |||||||
5 | zf-CCCH | 26 | 1.6e-08 | 462 | 486 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ r+G Ck+G+ C ++H++ TRIDC5AG020500.10 462 QPVCTYYERYGVCKFGPACMYNHPF 486 789********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence |
CSRRRRYLSL SPRRRMADAD AKAPPKSNLD ADLIASISPS SNSSGARNAV AIESQFADLA 60 ISDELPKPSG WGDDAVLGIA GSDEITGEIT GGKVQPVATA DSRPRFPQRH AEPDCTYYLK 120 FGTCRFGMKC KFNHPARKKK NRVKASGSSS SGSNDISNKA FPPDDDQTPK EEYEDLVPNI 180 SAEVDLLGRM EAMQLKIADE TEKGFYLKKF KETEQKVAKE KRKETVSEGS AQEECKYYST 240 PGGCKFGESC RYLHYEGKER KTEVAKGGKE CPYYMRIGSC KFATNCRFHH PDPSNVVSRD 300 PMLEHENGDI PQQNVQASSQ LNVPVWSADQ RALNEHCAPF LAPASSYSAG MIPPRGMYPS 360 PEWSGYHQVP LGPYYPPGIA FHHFPTPPVN HPMYRGADVP GHQELPSDEY PERPGQLECQ 420 HFVKSGFCKF KAKCKYHHPR SLVPPPTAGA LSPLGLPLRS DQPVCTYYER YGVCKFGPAC 480 MYNHPFNFGH PVSAAGPPLS AQYLTSGNYT V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.2 | 5e-57 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5AG020500.10 |