PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG020080.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GATA

Protein Properties

Length: 390aa MW: 42958.8 Da PI: 9.3943

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG020080.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	35.8	1.1e-11	54	88	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C++ +Tp+ R+gp g tLCnaCG+ y k+g+ TRIDC5AG020080.5 54 CLHCKAVETPQRRSGPMGRGTLCNACGVWYSKNGT 88 99******************************997 PP
2	GATA	32.4	1.3e-10	144	178	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+++ plW +g+ g +++C aCG++y+k +l TRIDC5AG020080.5 144 CLHCGSSDPPLWIEGSMGRREVCTACGMRYKKGRL 178 99******************************986 PP
3	GATA	55.5	7.9e-18	248	282	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++Tp+WR+gp g tLCnaCG++yr +l TRIDC5AG020080.5 248 CQHCGSSETPQWREGPKGRATLCNACGVRYRQGRL 282 *******************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
WWSLRIPFIQ PLPPAGDPAN EEEGRRFPRT QRVQVAPSLD PGTADKPPKR LKRCLHCKAV 60 ETPQRRSGPM GRGTLCNACG VWYSKNGTLP EHRPVASPIV DSPLESPIWE PEVPGAIYLV 120 RKSATERMPP RTEAAPAPRP GTSCLHCGSS DPPLWIEGSM GRREVCTACG MRYKKGRLLP 180 ECRPAECSVT DSQQESPVIN SPPESPIWEP EAPPSVHLPR KPSKKKKRRR SRSEAPSAPW 240 PANKGKRCQH CGSSETPQWR EGPKGRATLC NACGVRYRQG RLLPEYRPVA SPTFVPTKHA 300 NTHRKVLQLH RTRQSNDEHP SPLPADSVTN LPPIRNELPT TSTAGLASED PTDAPGYTDN 360 PINVPSSLDS LLLDGPSAPL IVENTDAWKF

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

WWSLRIPFIQ PLPPAGDPAN EEEGRRFPRT QRVQVAPSLD PGTADKPPKR LKRCLHCKAV  60
ETPQRRSGPM GRGTLCNACG VWYSKNGTLP EHRPVASPIV DSPLESPIWE PEVPGAIYLV  120
RKSATERMPP RTEAAPAPRP GTSCLHCGSS DPPLWIEGSM GRREVCTACG MRYKKGRLLP  180
ECRPAECSVT DSQQESPVIN SPPESPIWEP EAPPSVHLPR KPSKKKKRRR SRSEAPSAPW  240
PANKGKRCQH CGSSETPQWR EGPKGRATLC NACGVRYRQG RLLPEYRPVA SPTFVPTKHA  300
NTHRKVLQLH RTRQSNDEHP SPLPADSVTN LPPIRNELPT TSTAGLASED PTDAPGYTDN  360
PINVPSSLDS LLLDGPSAPL IVENTDAWKF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	224	229	KKKKRR
2	224	230	KKKKRRR
3	225	231	KKKKRRR
4	225	230	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	1e-30	GATA family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG020080.5