PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG015470.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 617aa MW: 65299.4 Da PI: 6.2588

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG015470.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.1e-06	222	243	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f ++ C++Gd C +aHg TRIDC5AG015470.6 222 PCPEFKKGAGCRRGDMCEYAHG 243 8****88**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MGEASEYDGV DVAAVSARLL ELVADDDVTA LVDLLAAHPL LADEPAPWYS PARGAEPMTP 60 LMVAAAYGSV ACLDALLSPP HLADPNRSSA SSLSTPLHLA AAGGAPSAPT TVSRLLAAGA 120 DPTLLDHLHR RPSDLVALPP NSLPLKNHIL SLLGARKEWP PDPSLPDIKN GAYASDDFRM 180 YSFKVRACSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFKKGA GCRRGDMCEY 240 AHGVFESWLH PAQYRTRLCK DGVGCARRVC FFAHTPEELR PLYVSTGSAV PSPRGAMEMA 300 AMGMGLSSPG SSFTPPLSPS GGGSGMAWPQ PNLPALCLPG SAGNLHLSRL RTSLSARAMA 360 VDELLASGDY DNHLGSPASV RSARGKALVP SNLDELFSAE MAASHSPRYG DQGGAAFSPT 420 HKAAFLNQFQ QHQSLLSPRA AATPEPVSPM SSRLLAALAQ REKMQQQTLR SMSSRDLGSS 480 APLLVGSPVV GSSWSKWGLP SGTPDWGADN DELGRLKRSS SFDLRSGANT DEPDLSWVNT 540 LVKEPTPEKS STNGTMATES IGILGRSASH HGSIAGDDSA ILGGSANHRE GIDGEEDAAT 600 GVIGGWLEQL QLDEMVV

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MGEASEYDGV DVAAVSARLL ELVADDDVTA LVDLLAAHPL LADEPAPWYS PARGAEPMTP  60
LMVAAAYGSV ACLDALLSPP HLADPNRSSA SSLSTPLHLA AAGGAPSAPT TVSRLLAAGA  120
DPTLLDHLHR RPSDLVALPP NSLPLKNHIL SLLGARKEWP PDPSLPDIKN GAYASDDFRM  180
YSFKVRACSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFKKGA GCRRGDMCEY  240
AHGVFESWLH PAQYRTRLCK DGVGCARRVC FFAHTPEELR PLYVSTGSAV PSPRGAMEMA  300
AMGMGLSSPG SSFTPPLSPS GGGSGMAWPQ PNLPALCLPG SAGNLHLSRL RTSLSARAMA  360
VDELLASGDY DNHLGSPASV RSARGKALVP SNLDELFSAE MAASHSPRYG DQGGAAFSPT  420
HKAAFLNQFQ QHQSLLSPRA AATPEPVSPM SSRLLAALAQ REKMQQQTLR SMSSRDLGSS  480
APLLVGSPVV GSSWSKWGLP SGTPDWGADN DELGRLKRSS SFDLRSGANT DEPDLSWVNT  540
LVKEPTPEKS STNGTMATES IGILGRSASH HGSIAGDDSA ILGGSANHRE GIDGEEDAAT  600
GVIGGWLEQL QLDEMVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-157	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG015470.6