PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5AG015470.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 595aa MW: 63184.2 Da PI: 6.3644 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 219 | 240 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f ++ C++Gd C +aHg TRIDC5AG015470.4 219 PCPEFKKGAGCRRGDMCEYAHG 240 8******88************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence |
ASEYDGVDVA AVSARLLELV ADDDVTALVD LLAAHPLLAD EPAPWYSPAR GAEPMTPLMV 60 AAAYGSVACL DALLSPPHLA DPNRSSASSL STPLHLAAAG GAPSAPTTVS RLLAAGADPT 120 LLDHLHRRPS DLVALPPNSL PLKNHILSLL GARKEWPPDP SLPDIKNGAY ASDDFRMYSF 180 KVRACSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFKKGAGCR RGDMCEYAHG 240 VFESWLHPAQ YRTRLCKDGV GCARRVCFFA HTPEELRPLY VSTGSAVPSP RGAMEMAAMG 300 MGLSSPGSSF TPPLSPSGGG SGMAWPQPNL PALCLPGSAG NLHLSRLRTS LSARAMAVDE 360 LLASGDYDNH LGSPASVRSA RGKALVPSNL DELFSAEMAA SHSPRYGDQG GAAFSPTHKA 420 AFLNQFQQHQ SLLSPRAAAT PEPVSPMSSR LLAALAQREK MQQQTLRSMS SRDLGSSAPL 480 LVGSPVVGSS WSKWGLPSGT PDWGADNDEL GRLKRSSSFD LRSGANTDEP DLSWVNTLVK 540 EPTPEKSSTN GTMATESIGI LGRSASREGI DGEEDAATGV IGGWLEQLQL DEMVV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-160 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5AG015470.4 |