PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG058350.6
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 314aa    MW: 35003.2 Da    PI: 9.7118
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG058350.6genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.7e-28101151151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                       krien + rqvtfskRr g+lKKA+ELSvLCdaeva+++fs++g+lye+ s
  TRIDC4BG058350.6 101 KRIENPTSRQVTFSKRRGGLLKKAFELSVLCDAEVALVVFSPRGRLYEFTS 151
                       79***********************************************75 PP
2K-box54.93.9e-19173263999
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       + ++++e+ + +++ L k+++ L+  + +llG++Le++s++eLq+Le ++eksl  iR+ K++ + eq+++l++ke  l+++n++L ++ +
  TRIDC4BG058350.6 173 TVQQDMEKIKADAEGLSKKLDALEACKSKLLGQNLEECSIEELQSLEVKIEKSLLGIRAMKTRRFEEQLSTLRQKEMTLRQHNEELYSQCQ 263
                       5678899*******************************************************************************98875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
SDLTALAIFG QSPLAVLARS PSSSRGWAGV FLFSPSPRRP NWDNSTHLLF TSPLPSPLCV  60
RSAGRLIGGG RFFWFGLVPD RICGWEERRG AKMVRGKTQM KRIENPTSRQ VTFSKRRGGL  120
LKKAFELSVL CDAEVALVVF SPRGRLYEFT SSSMKNTIER YKTVTKDNMS RQTVQQDMEK  180
IKADAEGLSK KLDALEACKS KLLGQNLEEC SIEELQSLEV KIEKSLLGIR AMKTRRFEEQ  240
LSTLRQKEMT LRQHNEELYS QCQKEQHLAS EAAAPPAPAT LAALPAPVTL EEQGQQMVDV  300
ETDLFLGLPG TGRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-64MIKC_MADS family protein