PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG058350.5
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 298aa    MW: 33028.6 Da    PI: 6.7828
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG058350.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.4e-2885135151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                       krien + rqvtfskRr g+lKKA+ELSvLCdaeva+++fs++g+lye+ s
  TRIDC4BG058350.5  85 KRIENPTSRQVTFSKRRGGLLKKAFELSVLCDAEVALVVFSPRGRLYEFTS 135
                       79***********************************************75 PP
2K-box553.5e-19157247999
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       + ++++e+ + +++ L k+++ L+  + +llG++Le++s++eLq+Le ++eksl  iR+ K++ + eq+++l++ke  l+++n++L ++ +
  TRIDC4BG058350.5 157 TVQQDMEKIKADAEGLSKKLDALEACKSKLLGQNLEECSIEELQSLEVKIEKSLLGIRAMKTRRFEEQLSTLRQKEMTLRQHNEELYSQCQ 247
                       5678899*******************************************************************************98875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
VAATPSGPGT EKESQGGEEE EEEGEGGAAA SYGRTLHRSD LTALAIFGRL IGGGRFFWFG  60
LVPDRICGWE ERRGAKMVRG KTQMKRIENP TSRQVTFSKR RGGLLKKAFE LSVLCDAEVA  120
LVVFSPRGRL YEFTSSSMKN TIERYKTVTK DNMSRQTVQQ DMEKIKADAE GLSKKLDALE  180
ACKSKLLGQN LEECSIEELQ SLEVKIEKSL LGIRAMKTRR FEEQLSTLRQ KEMTLRQHNE  240
ELYSQCQKEQ HLASEAAAPP APATLAALPA PVTLEEQGQQ MVDVETDLFL GLPGTGRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.18e-65MIKC_MADS family protein