PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG058350.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 324aa    MW: 35700.6 Da    PI: 6.7834
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG058350.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885e-28111161151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                       krien + rqvtfskRr g+lKKA+ELSvLCdaeva+++fs++g+lye+ s
  TRIDC4BG058350.4 111 KRIENPTSRQVTFSKRRGGLLKKAFELSVLCDAEVALVVFSPRGRLYEFTS 161
                       79***********************************************75 PP
2K-box55.32.9e-19183273999
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       + ++++e+ + +++ L k+++ L+  + +llG++Le++s++eLq+Le ++eksl  iR+ K++ + eq+++l++ke  l+++n++L ++ +
  TRIDC4BG058350.4 183 TVQQDMEKIKADAEGLSKKLDALEACKSKLLGQNLEECSIEELQSLEVKIEKSLLGIRAMKTRRFEEQLSTLRQKEMTLRQHNEELYSQCQ 273
                       5678899*******************************************************************************98875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
PTTSTQNFLF LFPLGPGASP PATRDGVAAT PSGPGTEKES QGGEEEEEEG EGGAAASYGR  60
TLHRSDLTAL AIFGRLIGGG RFFWFGLVPD RICGWEERRG AKMVRGKTQM KRIENPTSRQ  120
VTFSKRRGGL LKKAFELSVL CDAEVALVVF SPRGRLYEFT SSSMKNTIER YKTVTKDNMS  180
RQTVQQDMEK IKADAEGLSK KLDALEACKS KLLGQNLEEC SIEELQSLEV KIEKSLLGIR  240
AMKTRRFEEQ LSTLRQKEMT LRQHNEELYS QCQKEQHLAS EAAAPPAPAT LAALPAPVTL  300
EEQGQQMVDV ETDLFLGLPG TGRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-64MIKC_MADS family protein