PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC4BG058350.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 273aa MW: 30493.7 Da PI: 8.7188 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.4 | 3.8e-28 | 111 | 161 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+++fs++g+lye+ s TRIDC4BG058350.2 111 KRIENPTSRQVTFSKRRGGLLKKAFELSVLCDAEVALVVFSPRGRLYEFTS 161 79***********************************************75 PP | |||||||
2 | K-box | 56.1 | 1.6e-19 | 183 | 272 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++++e+ + +++ L k+++ L+ + +llG++Le++s++eLq+Le ++eksl iR+ K++ + eq+++l++ke l+++n++L ++ TRIDC4BG058350.2 183 TVQQDMEKIKADAEGLSKKLDALEACKSKLLGQNLEECSIEELQSLEVKIEKSLLGIRAMKTRRFEEQLSTLRQKEMTLRQHNEELYSQC 272 56788999******************************************************************************9875 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence |
PTTSTQNFLF LFPLGPGASP PATRDGVAAT PSGPGTEKES QGGEEEEEEG EGGAAASYGR 60 TLHRSDLTAL AIFGRLIGGG RFFWFGLVPD RICGWEERRG AKMVRGKTQM KRIENPTSRQ 120 VTFSKRRGGL LKKAFELSVL CDAEVALVVF SPRGRLYEFT SSSMKNTIER YKTVTKDNMS 180 RQTVQQDMEK IKADAEGLSK KLDALEACKS KLLGQNLEEC SIEELQSLEV KIEKSLLGIR 240 AMKTRRFEEQ LSTLRQKEMT LRQHNEELYS QCQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45660.1 | 3e-65 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC4BG058350.2 |