PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG058350.15

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 289aa MW: 32476.4 Da PI: 9.5173

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG058350.15	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.3	4.2e-28	76	126	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+++fs++g+lye+ s TRIDC4BG058350.15 76 KRIENPTSRQVTFSKRRGGLLKKAFELSVLCDAEVALVVFSPRGRLYEFTS 126 79***********************************************75 PP
2	K-box	55.1	3.3e-19	148	238	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++++e+ + +++ L k+++ L+ + +llG++Le++s++eLq+Le ++eksl iR+ K++ + eq+++l++ke l+++n++L ++ + TRIDC4BG058350.15 148 TVQQDMEKIKADAEGLSKKLDALEACKSKLLGQNLEECSIEELQSLEVKIEKSLLGIRAMKTRRFEEQLSTLRQKEMTLRQHNEELYSQCQ 238 5678899*******************************************************************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
GWAGVFLFSP SPRRPNWDNS THLLFTSPLP SPLCVRSAGR LIGGGRFFWF GLVPDRICGW 60 EERRGAKMVR GKTQMKRIEN PTSRQVTFSK RRGGLLKKAF ELSVLCDAEV ALVVFSPRGR 120 LYEFTSSSMK NTIERYKTVT KDNMSRQTVQ QDMEKIKADA EGLSKKLDAL EACKSKLLGQ 180 NLEECSIEEL QSLEVKIEKS LLGIRAMKTR RFEEQLSTLR QKEMTLRQHN EELYSQCQKE 240 QHLASEAAAP PAPATLAALP APVTLEEQGQ QMVDVETDLF LGLPGTGRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	2e-64	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG058350.15