PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG058350.13

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 291aa MW: 32719.6 Da PI: 9.7121

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG058350.13	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.3	4.2e-28	78	128	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+++fs++g+lye+ s TRIDC4BG058350.13 78 KRIENPTSRQVTFSKRRGGLLKKAFELSVLCDAEVALVVFSPRGRLYEFTS 128 79***********************************************75 PP
2	K-box	55.1	3.3e-19	150	240	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++++e+ + +++ L k+++ L+ + +llG++Le++s++eLq+Le ++eksl iR+ K++ + eq+++l++ke l+++n++L ++ + TRIDC4BG058350.13 150 TVQQDMEKIKADAEGLSKKLDALEACKSKLLGQNLEECSIEELQSLEVKIEKSLLGIRAMKTRRFEEQLSTLRQKEMTLRQHNEELYSQCQ 240 5678899*******************************************************************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
SRGWAGVFLF SPSPRRPNWD NSTHLLFTSP LPSPLCVRSA GRLIGGGRFF WFGLVPDRIC 60 GWEERRGAKM VRGKTQMKRI ENPTSRQVTF SKRRGGLLKK AFELSVLCDA EVALVVFSPR 120 GRLYEFTSSS MKNTIERYKT VTKDNMSRQT VQQDMEKIKA DAEGLSKKLD ALEACKSKLL 180 GQNLEECSIE ELQSLEVKIE KSLLGIRAMK TRRFEEQLST LRQKEMTLRQ HNEELYSQCQ 240 KEQHLASEAA APPAPATLAA LPAPVTLEEQ GQQMVDVETD LFLGLPGTGR S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	2e-64	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG058350.13