PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC4BG058350.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 254aa MW: 28960.4 Da PI: 10.1319 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.6 | 3.4e-28 | 81 | 131 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+++fs++g+lye+ s TRIDC4BG058350.12 81 KRIENPTSRQVTFSKRRGGLLKKAFELSVLCDAEVALVVFSPRGRLYEFTS 131 79***********************************************75 PP | |||||||
2 | K-box | 56.8 | 9.5e-20 | 153 | 243 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++++e+ + +++ L k+++ L+ + +llG++Le++s++eLq+Le ++eksl iR+ K++ + eq+++l++ke l+++n++L ++++ TRIDC4BG058350.12 153 TVQQDMEKIKADAEGLSKKLDALEACKSKLLGQNLEECSIEELQSLEVKIEKSLLGIRAMKTRRFEEQLSTLRQKEMTLRQHNEELYSQVK 243 56788999******************************************************************************99986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence |
PSSSRGWAGV FLFSPSPRRP NWDNSTHLLF TSPLPSPLCV RSAGRLIGGG RFFWFGLVPD 60 RICGWEERRG AKMVRGKTQM KRIENPTSRQ VTFSKRRGGL LKKAFELSVL CDAEVALVVF 120 SPRGRLYEFT SSSMKNTIER YKTVTKDNMS RQTVQQDMEK IKADAEGLSK KLDALEACKS 180 KLLGQNLEEC SIEELQSLEV KIEKSLLGIR AMKTRRFEEQ LSTLRQKEMT LRQHNEELYS 240 QVKMDGQSNC CLVE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45660.1 | 7e-65 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC4BG058350.12 |