PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG058350.11
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 297aa    MW: 33305.2 Da    PI: 9.8736
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG058350.11genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.3e-2884134151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                        krien + rqvtfskRr g+lKKA+ELSvLCdaeva+++fs++g+lye+ s
  TRIDC4BG058350.11  84 KRIENPTSRQVTFSKRRGGLLKKAFELSVLCDAEVALVVFSPRGRLYEFTS 134
                        79***********************************************75 PP
2K-box553.5e-19156246999
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        + ++++e+ + +++ L k+++ L+  + +llG++Le++s++eLq+Le ++eksl  iR+ K++ + eq+++l++ke  l+++n++L ++ +
  TRIDC4BG058350.11 156 TVQQDMEKIKADAEGLSKKLDALEACKSKLLGQNLEECSIEELQSLEVKIEKSLLGIRAMKTRRFEEQLSTLRQKEMTLRQHNEELYSQCQ 246
                        5678899*******************************************************************************98875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
ARSPSSSRGW AGVFLFSPSP RRPNWDNSTH LLFTSPLPSP LCVRSAGRLI GGGRFFWFGL  60
VPDRICGWEE RRGAKMVRGK TQMKRIENPT SRQVTFSKRR GGLLKKAFEL SVLCDAEVAL  120
VVFSPRGRLY EFTSSSMKNT IERYKTVTKD NMSRQTVQQD MEKIKADAEG LSKKLDALEA  180
CKSKLLGQNL EECSIEELQS LEVKIEKSLL GIRAMKTRRF EEQLSTLRQK EMTLRQHNEE  240
LYSQCQKEQH LASEAAAPPA PATLAALPAP VTLEEQGQQM VDVETDLFLG LPGTGRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-64MIKC_MADS family protein