PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4BG026790.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YC | ||||||||
Protein Properties | Length: 245aa MW: 26950.3 Da PI: 5.4666 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 57.3 | 3.4e-18 | 3 | 77 | 24 | 98 |
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+s+a elf+ +l rs+ + ++ +tl+ ++++v+r fdfl++iv + TRIDC4BG026790.5 3 ARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRSYKITLQSGAKTLNSFHLKQCVKRYSSFDFLTEIVNK 77 7**********************************************************************9976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
CPARIKKIMQ ADEDVGKIAL AVPVLVSRAL ELFLQDLIDR SYKITLQSGA KTLNSFHLKQ 60 CVKRYSSFDF LTEIVNKVPD LGGGESCGDE RGLPRRRKFS NGSDPENEEP RSSKMPIRSL 120 NTSPRGRGRG RGRGRGRPPT KRKEIGYVQF EDESSMFAEQ SEPLPGDEIV PETNRGNEII 180 PQSSHPLVEA PSVVTPAVIS KVEKATNHQP DLPMPDAIGG IGVGPSSFGH LTVQVDEEED 240 YDNED |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 98 | PRRRK |
2 | 125 | 134 | RGRGRGRGRG |
3 | 125 | 135 | RGRGRGRGRGR |
4 | 127 | 136 | RGRGRGRGRG |
5 | 127 | 137 | RGRGRGRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 5e-43 | NF-YC family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4BG026790.5 |