PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4BG026790.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YC | ||||||||
Protein Properties | Length: 247aa MW: 27147.4 Da PI: 5.7869 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 59.1 | 9.9e-19 | 3 | 79 | 22 | 98 |
NF-YC 22 PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 P arikki++adedv +i+ +Pvl+s+a elf+ +l rs+ + ++ +tl+ ++++v+r fdfl++iv + TRIDC4BG026790.4 3 PRARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRSYKITLQSGAKTLNSFHLKQCVKRYSSFDFLTEIVNK 79 779**********************************************************************9976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
GSPRARIKKI MQADEDVGKI ALAVPVLVSR ALELFLQDLI DRSYKITLQS GAKTLNSFHL 60 KQCVKRYSSF DFLTEIVNKV PDLGGGESCG DERGLPRRRK FSNGSDPENE EPRSSKMPIR 120 SLNTSPRGRG RGRGRGRGRP PTKRKEIGYV QFEDESSMFA EQSEPLPGDE IVPETNRGNE 180 IIPQSSHPLV EAPSVVTPAV ISKVEKATNH QPDLPMPDAI GGIGVGPSSF GHLTVQVDEE 240 EDYDNED |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 100 | PRRRK |
2 | 127 | 136 | RGRGRGRGRG |
3 | 127 | 137 | RGRGRGRGRGR |
4 | 129 | 138 | RGRGRGRGRG |
5 | 129 | 139 | RGRGRGRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 8e-44 | NF-YC family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4BG026790.4 |