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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC4BG026790.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 303aa MW: 33572.8 Da PI: 9.5694 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 63 | 6.1e-20 | 56 | 135 | 19 | 98 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
+++P arikki++adedv +i+ +Pvl+s+a elf+ +l rs+ + ++ +tl+ ++++v+r fdfl++iv +
TRIDC4BG026790.1 56 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRSYKITLQSGAKTLNSFHLKQCVKRYSSFDFLTEIVNK 135
689*************************************************************************9976 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 303 aa Download sequence |
HESAVLVQVG GKTTKQETQS SRRTRKENTQ KVDYDCRHRA RRGVGVATKM RKKLGTRFPA 60 ARIKKIMQAD EDVGKIALAV PVLVSRALEL FLQDLIDRSY KITLQSGAKT LNSFHLKQCV 120 KRYSSFDFLT EIVNKVPDLG GGESCGDERG LPRRRKFSNG SDPENEEPRS SKMPIRSLNT 180 SPRGRGRGRG RGRGRPPTKR KEIGYVQFED ESSMFAEQSE PLPGDEIVPE TNRGNEIIPQ 240 SSHPLVEAPS VVTPAVISKV EKATNHQPDL PMPDAIGGIG VGPSSFGHLT VQVDEEEDYD 300 NED |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 152 | 156 | PRRRK |
| 2 | 183 | 192 | RGRGRGRGRG |
| 3 | 183 | 193 | RGRGRGRGRGR |
| 4 | 185 | 194 | RGRGRGRGRG |
| 5 | 185 | 195 | RGRGRGRGRGR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 4e-50 | NF-YC family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC4BG026790.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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