PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG006040.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 616aa MW: 66456.5 Da PI: 8.0104

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG006040.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22	2.9e-07	169	189	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg TRIDC4BG006040.2 169 PCPDFRK-GVCRRGDMCEYAHG 189 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
SAVEAVRLLL VAGADADATD ASGCRPADVI SVPPKMIDAK IALQDLLGLP KSGHGVLRVV 60 TRATNLTSSP VSSPTAEDAR SPSAAVMMMS KFPDLPRVAT SEKKEYPVDP SLPDIKNSIY 120 ASDEFRMYSF KIRPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PDFRKGVCRR 180 GDMCEYAHGV FECWLHPAQY RTRLCKDGTG CNRRVCFFAH TTDELRPLYV STGSAVPSPR 240 ASATAAMEMA AAMGLMPGSP SSVSAVMSPF TPPRSPSGNG MPPSLGWQQP NVPTLHLPGS 300 SLQSSRLRSS LNARDMHMDD YSLLQDIDSQ LINDLCYSRL GSSAGGNHSS RTKSLNPSNL 360 DDLFSAEMVS SPRYNNADQG AMFSPSQKAA ILNQFQQQQQ LLSPINTGFS PKAVDNQQLH 420 SRSSLLQASL GISSPGRMSP RCVESGSPMN SHLAAALAQR EKQQQQQHQQ HQQTMRSLSS 480 RDLGPSAARA SAAVGSPLSS SWSKWGSPSG APDWGVNGEE LGKLRRSSSF ELRSGGDDPD 540 LSWVHTLVKE SPPEKQATTA ESINNSVRPS PQMHPGVSNG EGSGASTQLN RHDQAAVIGA 600 LLEQMQLDEQ IGSLAT

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

SAVEAVRLLL VAGADADATD ASGCRPADVI SVPPKMIDAK IALQDLLGLP KSGHGVLRVV  60
TRATNLTSSP VSSPTAEDAR SPSAAVMMMS KFPDLPRVAT SEKKEYPVDP SLPDIKNSIY  120
ASDEFRMYSF KIRPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PDFRKGVCRR  180
GDMCEYAHGV FECWLHPAQY RTRLCKDGTG CNRRVCFFAH TTDELRPLYV STGSAVPSPR  240
ASATAAMEMA AAMGLMPGSP SSVSAVMSPF TPPRSPSGNG MPPSLGWQQP NVPTLHLPGS  300
SLQSSRLRSS LNARDMHMDD YSLLQDIDSQ LINDLCYSRL GSSAGGNHSS RTKSLNPSNL  360
DDLFSAEMVS SPRYNNADQG AMFSPSQKAA ILNQFQQQQQ LLSPINTGFS PKAVDNQQLH  420
SRSSLLQASL GISSPGRMSP RCVESGSPMN SHLAAALAQR EKQQQQQHQQ HQQTMRSLSS  480
RDLGPSAARA SAAVGSPLSS SWSKWGSPSG APDWGVNGEE LGKLRRSSSF ELRSGGDDPD  540
LSWVHTLVKE SPPEKQATTA ESINNSVRPS PQMHPGVSNG EGSGASTQLN RHDQAAVIGA  600
LLEQMQLDEQ IGSLAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-171	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG006040.2