PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG006040.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 743aa MW: 79561.3 Da PI: 7.6863

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG006040.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.7e-07	296	316	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg TRIDC4BG006040.1 296 PCPDFRK-GVCRRGDMCEYAHG 316 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence
MNGALIPAAA GADAAAPRKN AVAEMARHLT VDTDDAFARL LELAADDDAE GLRRALERAP 60 PAAADEAGLW YGRRKALEQR TPLMVAATYG SLAALRLLLS LPSVDVNRRC GPDGTTALHC 120 AASGGSSSAV EAVRLLLVAG ADADATDASG CRPADVISVP PKMIDAKIAL QDLLGLPKSG 180 HGVLRVVTRA TNLTSSPVSS PTAEDARSPS AAVMMMSKFP DLPRVATSEK KEYPVDPSLP 240 DIKNSIYASD EFRMYSFKIR PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF 300 RKGVCRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCNR RVCFFAHTTD ELRPLYVSTG 360 SAVPSPRASA TAAMEMAAAM GLMPGSPSSV SAVMSPFTPP RSPSGNGMPP SLGWQQPNVP 420 TLHLPGSSLQ SSRLRSSLNA RDMHMDDYSL LQDIDSQLIN DLCYSRLGSS AGGNHSSRTK 480 SLNPSNLDDL FSAEMVSSPR YNNADQGAMF SPSQKAAILN QFQQQQQLLS PINTGFSPKA 540 VDNQQLHSRS SLLQASLGIS SPGRMSPRCV ESGSPMNSHL AAALAQREKQ QQQQHQQHQQ 600 TMRSLSSRDL GPSAARASAA VGSPLSSSWS KWGSPSGAPD WGVNGEELGK LRRSSSFELR 660 SGGDDPDLSW VHTLVKESPP EKQATTAESI NNSVRPSPQM HPGVSNGEGS GASTQLNRHD 720 QAAVIGALLE QMQLDEQIGS LAT

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence

MNGALIPAAA GADAAAPRKN AVAEMARHLT VDTDDAFARL LELAADDDAE GLRRALERAP  60
PAAADEAGLW YGRRKALEQR TPLMVAATYG SLAALRLLLS LPSVDVNRRC GPDGTTALHC  120
AASGGSSSAV EAVRLLLVAG ADADATDASG CRPADVISVP PKMIDAKIAL QDLLGLPKSG  180
HGVLRVVTRA TNLTSSPVSS PTAEDARSPS AAVMMMSKFP DLPRVATSEK KEYPVDPSLP  240
DIKNSIYASD EFRMYSFKIR PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF  300
RKGVCRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCNR RVCFFAHTTD ELRPLYVSTG  360
SAVPSPRASA TAAMEMAAAM GLMPGSPSSV SAVMSPFTPP RSPSGNGMPP SLGWQQPNVP  420
TLHLPGSSLQ SSRLRSSLNA RDMHMDDYSL LQDIDSQLIN DLCYSRLGSS AGGNHSSRTK  480
SLNPSNLDDL FSAEMVSSPR YNNADQGAMF SPSQKAAILN QFQQQQQLLS PINTGFSPKA  540
VDNQQLHSRS SLLQASLGIS SPGRMSPRCV ESGSPMNSHL AAALAQREKQ QQQQHQQHQQ  600
TMRSLSSRDL GPSAARASAA VGSPLSSSWS KWGSPSGAPD WGVNGEELGK LRRSSSFELR  660
SGGDDPDLSW VHTLVKESPP EKQATTAESI NNSVRPSPQM HPGVSNGEGS GASTQLNRHD  720
QAAVIGALLE QMQLDEQIGS LAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG006040.1