PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG001310.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 563aa MW: 60760.8 Da PI: 4.8039

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG001310.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	64	85	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ L+rH r+H TRIDC4BG001310.1 64 KCAKCPREFCSSVALRRHTRVH 85 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MAASASGSVS GQIQPPKIPD AVVALAQAAA KANNNSNNSA AADATDKYLP GWPLFSPPKM 60 QLTKCAKCPR EFCSSVALRR HTRVHRRALK IDKDFPKNRD HLAAFWDKLT VGQAQAILSL 120 EGVAIEETSA LFILTSLSSW MCKPGYASLP LPYARAGNEL LDLIQTAASR LPISSNELFI 180 MFDEASENTF LCTDAACVQK FLFDGEVEKV ATELKNVVAC TSYILEQKLV EAWSADKAAE 240 ALRCQKLLVE EEDAAQKRQA EIMERKRMKK LRQKEQRLKD LKDEGTTVQL PEVVDGATGS 300 PGIESLEAVS GPGLHEQEDP QYLQLSAPVP PSEDNACNGE DAGAVFREQA MATANLDRVE 360 NLPQNSSASA SSVTASKHPS SVRHSRHREP NVGAVTNKSK TWAWKVRSGV EERCPKGEPD 420 VDANQETAPL NTDKNSQVLI GSISVAIEEG SRCSQDSKDY HPVPPESDLT TLNDPVAEVM 480 QPVSHDENAC EDTDGGTITP AAEDRSPSSV VTDESGSVGG NPESAEGVGL RQGTVSSGQE 540 ASAFLSQSKH LSYWLYTQLP FSN

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MAASASGSVS GQIQPPKIPD AVVALAQAAA KANNNSNNSA AADATDKYLP GWPLFSPPKM  60
QLTKCAKCPR EFCSSVALRR HTRVHRRALK IDKDFPKNRD HLAAFWDKLT VGQAQAILSL  120
EGVAIEETSA LFILTSLSSW MCKPGYASLP LPYARAGNEL LDLIQTAASR LPISSNELFI  180
MFDEASENTF LCTDAACVQK FLFDGEVEKV ATELKNVVAC TSYILEQKLV EAWSADKAAE  240
ALRCQKLLVE EEDAAQKRQA EIMERKRMKK LRQKEQRLKD LKDEGTTVQL PEVVDGATGS  300
PGIESLEAVS GPGLHEQEDP QYLQLSAPVP PSEDNACNGE DAGAVFREQA MATANLDRVE  360
NLPQNSSASA SSVTASKHPS SVRHSRHREP NVGAVTNKSK TWAWKVRSGV EERCPKGEPD  420
VDANQETAPL NTDKNSQVLI GSISVAIEEG SRCSQDSKDY HPVPPESDLT TLNDPVAEVM  480
QPVSHDENAC EDTDGGTITP AAEDRSPSSV VTDESGSVGG NPESAEGVGL RQGTVSSGQE  540
ASAFLSQSKH LSYWLYTQLP FSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	271	ERKRMKKL
2	269	279	KKLRQKEQRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	4e-81	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG001310.1