PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG047340.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 528aa MW: 57079.8 Da PI: 4.8383

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG047340.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.6e-05	14	35	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ L+rH r+H TRIDC4AG047340.1 14 KCAKCPREFCSSVALRRHTRVH 35 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
GWPLFSPPKM QLTKCAKCPR EFCSSVALRR HTRVHRRALK IDKDFPKNRD HLAAFWDKLT 60 VDQAQAILSL EGVAIEETSA LFILTSLSSW MCKPGYASLP LPYARAGNEL LDLIQTAASR 120 LPISSNELFI MLDEASENTF LCTNAADAAF VQKFLFDGEV EKVATELKNV VACTSYILEQ 180 KLVEAWSADK AAEALRCQKL LVEEEDAAQK RQAEIMERKR MKKLRQKEQR LKDLKDEGTM 240 VQLPEVVDGA TSSPGIQSLE AVSGPGLHEQ EDPQHLQLSA PVPSDDNGCN GEDANCGSGQ 300 EIDTAAVFRE QAMATSNLDR AENLPPNSSV SGSSATASKH PSSSSVRHSR HREPNVGAAT 360 NKSKTWAWKV RTGVEERCPK GEPDVDANQE TAPLNTDKNS QVLIGSISVA IEDGGGCSQD 420 SKDNHPAPPE SDSNTLNDPV AKVMQPTSHD ENGCEDANGG TITPAAEDHS PSSIMTDESG 480 SVCGNVESAE SVGLQRGTMM SSGQEAAAFL SQRWKEAVAG DHVKLVLC

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

GWPLFSPPKM QLTKCAKCPR EFCSSVALRR HTRVHRRALK IDKDFPKNRD HLAAFWDKLT  60
VDQAQAILSL EGVAIEETSA LFILTSLSSW MCKPGYASLP LPYARAGNEL LDLIQTAASR  120
LPISSNELFI MLDEASENTF LCTNAADAAF VQKFLFDGEV EKVATELKNV VACTSYILEQ  180
KLVEAWSADK AAEALRCQKL LVEEEDAAQK RQAEIMERKR MKKLRQKEQR LKDLKDEGTM  240
VQLPEVVDGA TSSPGIQSLE AVSGPGLHEQ EDPQHLQLSA PVPSDDNGCN GEDANCGSGQ  300
EIDTAAVFRE QAMATSNLDR AENLPPNSSV SGSSATASKH PSSSSVRHSR HREPNVGAAT  360
NKSKTWAWKV RTGVEERCPK GEPDVDANQE TAPLNTDKNS QVLIGSISVA IEDGGGCSQD  420
SKDNHPAPPE SDSNTLNDPV AKVMQPTSHD ENGCEDANGG TITPAAEDHS PSSIMTDESG  480
SVCGNVESAE SVGLQRGTMM SSGQEAAAFL SQRWKEAVAG DHVKLVLC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	224	ERKRMKKL
2	222	232	KKLRQKEQRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	3e-86	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG047340.1