PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG042930.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 773aa MW: 82802.2 Da PI: 7.9246

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG042930.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.8e-07	325	345	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg TRIDC4AG042930.2 325 PCPDFRK-GVCRRGDMCEYAHG 345 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence
AVLFRTSLDW LLDSCFFGSV ASIRRAKKMN GAPIPAAAGA DAATTPKKNA VAEMARHLTV 60 DTDDAFAGLL ELAADDDADG LRRALERAPP AAADEAGLWY GRRKALEQRT PLMVAATYGS 120 LAALRLLLSV PSVDVNRRCG PDGTTALHCA ASGGSSSAVE AVRLLLVAGA DADAADASGC 180 RPADVISVPP KMIDAKIALQ DLLGLPKSGH GVLRVVTRAT NLTSSPVSSP TAEDARSPSA 240 AVMMMSKFPD LPRVATSEKK EYPVDPSLPD IKNSIYASDE FRMYSFKIRP CSRAYSHDWT 300 ECPFVHPGEN ARRRDPRKYH YSCVPCPDFR KGVCRRGDMC EYAHGVFECW LHPAQYRTRL 360 CKDGTGCNRR VCFFAHTTDE LRPLYVSTGS AVPSPRASAT AAMEMAAAMG LMPGSPSSVS 420 VVMSPFTPPR SPSGNGMPPS LGWQQPNVPT LHLPGSSLQS SRLRSSLNAR DMPVDDYSLL 480 QDIDSQLIND LCYSRLGSSA GGNHSSRTKS LNPSNLDDLF SAEMVSSPRY NNADQGAMFS 540 PSQKAAILNQ FQQQQQLLSP INTGFSPKAV DNQQMHSRSS LLQASLGISS PGRMSPRCVE 600 SGSPMNSHLA AALAQREKQQ QQQHQQHQQT MRSLSSRDLG PSAARASAAV GSPLSSSWSK 660 WGSPSGAPDW GVNGEELGKL RRSSSFELRS GGDDPDLSWV HTLVKESPPE KQVTTAESIN 720 NSVRPSPQMH PGVSNGEGPS VSTQLNRHDQ AAVIGALLEQ MQLDEQIGSL AAT

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence

AVLFRTSLDW LLDSCFFGSV ASIRRAKKMN GAPIPAAAGA DAATTPKKNA VAEMARHLTV  60
DTDDAFAGLL ELAADDDADG LRRALERAPP AAADEAGLWY GRRKALEQRT PLMVAATYGS  120
LAALRLLLSV PSVDVNRRCG PDGTTALHCA ASGGSSSAVE AVRLLLVAGA DADAADASGC  180
RPADVISVPP KMIDAKIALQ DLLGLPKSGH GVLRVVTRAT NLTSSPVSSP TAEDARSPSA  240
AVMMMSKFPD LPRVATSEKK EYPVDPSLPD IKNSIYASDE FRMYSFKIRP CSRAYSHDWT  300
ECPFVHPGEN ARRRDPRKYH YSCVPCPDFR KGVCRRGDMC EYAHGVFECW LHPAQYRTRL  360
CKDGTGCNRR VCFFAHTTDE LRPLYVSTGS AVPSPRASAT AAMEMAAAMG LMPGSPSSVS  420
VVMSPFTPPR SPSGNGMPPS LGWQQPNVPT LHLPGSSLQS SRLRSSLNAR DMPVDDYSLL  480
QDIDSQLIND LCYSRLGSSA GGNHSSRTKS LNPSNLDDLF SAEMVSSPRY NNADQGAMFS  540
PSQKAAILNQ FQQQQQLLSP INTGFSPKAV DNQQMHSRSS LLQASLGISS PGRMSPRCVE  600
SGSPMNSHLA AALAQREKQQ QQQHQQHQQT MRSLSSRDLG PSAARASAAV GSPLSSSWSK  660
WGSPSGAPDW GVNGEELGKL RRSSSFELRS GGDDPDLSWV HTLVKESPPE KQVTTAESIN  720
NSVRPSPQMH PGVSNGEGPS VSTQLNRHDQ AAVIGALLEQ MQLDEQIGSL AAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG042930.2