PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4AG011310.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 330aa    MW: 36657.6 Da    PI: 7.8914
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4AG011310.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12189214126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       y   +C+++ +tG+C yGd+CkF+H+
  TRIDC4AG011310.1 189 YQPDICKDYKETGYCGYGDSCKFMHD 214
                       67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
KPYPMSDGGG GEPGAGGSAP VCNFVRKPPK NIRKRPAASV GSDDEEGSGG DDSGAIAAAR  60
SKKPPSTTSK LFFSSADNSH EPRRFQFESS RTIQSSTDNR ATATLETETA YDRDARAIRE  120
RQLKQAEESL KKNPSASSSS GELYKGIHGY TDHKAGFRRE HTVSGEKAGG AHGPLRASAH  180
IRLSTRFDYQ PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQLEREWDE AEKARKRRIA  240
MRELDGSDAE AEEEDSDDDE ALPFACFICR EPFVDPVVTK CKHYFCEHCA LKHHSKNKKC  300
FVCNKPTLGI FNAAQEIRKK IAQDKKQQDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-130C3H family protein