PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4AG009990.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 395aa MW: 43913.7 Da PI: 10.0235 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 349 | 1.1e-106 | 48 | 395 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia..erdaki.......rernlalsekkaavaerd..................maflqrdk 65 mdddgs + rn+g+ye k nlglqlm s+a rd+k+ +++ a +++ +++++rd m+f+++++ TRIDC4AG009990.3 48 MDDDGSLSiRNWGFYETM---KGNLGLQLMPSVAggHRDTKPllpngtfLQHHNAPHHPPHSHHPRDygngepsggmpteppaihMDFVRNEA 137 9**************965...*************999*****999999955555699999********************************* PP GAGA_bind 66 alaernkalverdnkllalllvensla.............................salpvgvqvlsgtksidslqqlsepqledsavelree 129 +++ ++++ ++++ +++++++ + +++p+g +++++++ +++lq+ ++++ +++ee TRIDC4AG009990.3 138 WMHPSQHQHQQQHQHHHQNQHQQQHQHqhqhsreqkvlhavplgpaghighpghavHHHPTGFGMMPDARGAHTLQM-----MQPQEPPVPEE 225 **983333333333333232222222223455789999999999999999999999999999999999999999999.....66667777788 PP GAGA_bind 130 eklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqC 222 ek+ + +e+++++ k+ +kkrq++++pk +k kk+kk +++ ++ +++ +rs+ + k +++v+ng+++D+s++P+PvCsCtGa++qC TRIDC4AG009990.3 226 EKIAPPL-VEEHSVVGSKPPVKKRQQGRQPKLPKPKKPKK-VATPGEDGAPKARAPRSRGPLKPVEMVINGIDFDISRIPTPVCSCTGAPQQC 316 8766555.556777788888888*****************.556667777777779************************************* PP GAGA_bind 223 YkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 Y+WG+GGWqSaCCtt+iS+yPLP++tkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir TRIDC4AG009990.3 317 YRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 395 ******************************************************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence |
GFEGPRDWRL ECNGGYSLTV QSPKEEHISR SNLGFLGFRF VCSGPAEMDD DGSLSIRNWG 60 FYETMKGNLG LQLMPSVAGG HRDTKPLLPN GTFLQHHNAP HHPPHSHHPR DYGNGEPSGG 120 MPTEPPAIHM DFVRNEAWMH PSQHQHQQQH QHHHQNQHQQ QHQHQHQHSR EQKVLHAVPL 180 GPAGHIGHPG HAVHHHPTGF GMMPDARGAH TLQMMQPQEP PVPEEEKIAP PLVEEHSVVG 240 SKPPVKKRQQ GRQPKLPKPK KPKKVATPGE DGAPKARAPR SRGPLKPVEM VINGIDFDIS 300 RIPTPVCSCT GAPQQCYRWG AGGWQSACCT TSISTYPLPM NTKRRGARIA GRKMSQGAFK 360 KVLEKLAGEG YNLNNPIDLK TFWAKHGTNK FVTIR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 259 | 265 | PKKPKKV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68120.1 | 4e-62 | BBR-BPC family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4AG009990.3 |