PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G68120.1 | ||||||||
Common Name | ATBPC3, BPC3, T23K23.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 270aa MW: 30522.9 Da PI: 9.9211 | ||||||||
Description | basic pentacysteine 3 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 45.4 | 3e-14 | 2 | 101 | 1 | 90 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaav.........aerd........maflqrdkalaernkalver 77 m++dg ++rn+gyyep+ +++ nlg+ql+ si +r++k+ +++nl+++++++++ ++rd m++ ++l++ ++ AT1G68120.1 2 MEEDGLNNRNWGYYEPS-QFRPNLGFQLIPSILDRNEKPflspHSQNLNFITPSNVYgggsssvvsYPRDytvsdapfMSY----SWLNQ------HK 88 9***************9.***************************************999999888888888888777777....99999......99 PP GAGA_bind 78 dnkllalllvens 90 d+k++++++ AT1G68120.1 89 DSKFFSNVPEVSR 101 9999999886554 PP | |||||||
2 | GAGA_bind | 287.8 | 4.7e-88 | 102 | 270 | 126 | 301 |
GAGA_bind 126 lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqC 222 ++++ +l +++++++++e+ ++++++ +qr+ +pk+kk+kk k+ +++++++ ers +k+i++v+ngvs+D+++lPvPvCsCtG+++qC AT1G68120.1 102 MTQSMQLLQPEVVTEVDESVKRRHCSGGQRGGVPKVKKEKKLKD--------NNMPRVQrERSPLLRKCIEMVINGVSMDIGGLPVPVCSCTGMPQQC 191 5566678899*******************************999........344444448899********************************** PP GAGA_bind 223 YkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 Y+WG+GGWqSaCCtt++S+yPLPv+tkrrgaRiagrKmSqgaf+k+LekL+++G+d+snp+DLk+hWAkHGtnkfvtir AT1G68120.1 192 YRWGCGGWQSACCTTNVSMYPLPVNTKRRGARIAGRKMSQGAFRKVLEKLSSDGFDFSNPIDLKSHWAKHGTNKFVTIR 270 ******************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 5.1E-82 | 2 | 270 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 1.2E-161 | 2 | 270 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MMEEDGLNNR NWGYYEPSQF RPNLGFQLIP SILDRNEKPF LSPHSQNLNF ITPSNVYGGG 60 SSSVVSYPRD YTVSDAPFMS YSWLNQHKDS KFFSNVPEVS RMTQSMQLLQ PEVVTEVDES 120 VKRRHCSGGQ RGGVPKVKKE KKLKDNNMPR VQRERSPLLR KCIEMVINGV SMDIGGLPVP 180 VCSCTGMPQQ CYRWGCGGWQ SACCTTNVSM YPLPVNTKRR GARIAGRKMS QGAFRKVLEK 240 LSSDGFDFSN PIDLKSHWAK HGTNKFVTIR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.35567 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145337279 | 0.0 | ||||
Genevisible | 259998_at | 0.0 | ||||
Expression Atlas | AT1G68120 | - | ||||
AtGenExpress | AT1G68120 | - | ||||
ATTED-II | AT1G68120 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the gynobasal portion of the ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G68120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G68120 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC012563 | 0.0 | AC012563.7 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete sequence. | |||
GenBank | BT022117 | 0.0 | BT022117.1 Arabidopsis thaliana At1g68120 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176979.3 | 0.0 | BASIC PENTACYSTEINE protein | ||||
Swissprot | Q9C9X6 | 0.0 | BPC3_ARATH; Protein BASIC PENTACYSTEINE3 | ||||
TrEMBL | A0A178WPH8 | 0.0 | A0A178WPH8_ARATH; BPC3 | ||||
STRING | AT1G68120.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15347 | 15 | 18 | Representative plant | OGRP1865 | 12 | 40 |
Link Out ? help Back to Top | |
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Phytozome | AT1G68120.1 |
Entrez Gene | 843140 |
iHOP | AT1G68120 |
wikigenes | AT1G68120 |
Publications ? help Back to Top | |||
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