PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4AG006600.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 194aa MW: 21716.7 Da PI: 5.1264 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 28.8 | 1.5e-09 | 52 | 95 | 7 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 r tf R g+ A+EL vLC+aev +++f s g+ +y+ TRIDC4AG006600.5 52 ASRWATFGERNGGLVREAQELVVLCEAEVDILVFDSAGRQLDYC 95 56889*******************************99988887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence |
TPSSTSGPAD KEARQQRRQE VGGEGVAGEK RYQITSTNKH LIIGRGMVDG DASRWATFGE 60 RNGGLVREAQ ELVVLCEAEV DILVFDSAGR QLDYCSPHTS YMELDTAKRI SVEGLERFRE 120 VKYYLILIIV DTSGRHNQKA ALFEEMRQVA EARSLALLLL SSFIEIFADL MVFPQKRDLM 180 IFVMDGSIVH AAFD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 8e-12 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4AG006600.5 |