PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG005810.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 525aa MW: 55262.6 Da PI: 9.0527

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG005810.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H TRIDC4AG005810.4 55 FVCEICNKGFQRDQNLQLHRRGH 77 89*******************88 PP
2	zf-C2H2	13.4	0.00023	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ TRIDC4AG005810.4 131 WKCDKCSKKYAVQSDWKAHAKTC 153 58******************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MEVDTSSATA KSGGAPPPPP PGPPAKKKRA LPGMPDPDAE VIALSPKTLM ATNRFVCEIC 60 NKGFQRDQNL QLHRRGHNLP WKLRQRSGKE VRKRVYVCPE PSCVHHDASR ALGDLTGIKK 120 HFCRKHGEKK WKCDKCSKKY AVQSDWKAHA KTCGSREYRC DCGTLFSRRD SFITHRAFCD 180 ALAEESAKAR APPAEDGSSG AAAPPALPPP PAAPVPLQQL PPAPAPQQHE EPGNDGQQRE 240 IGAAAPEPVV QYTPPAPLMP SPPSVNGANV SASTSSVAAT SQSLLGSMFA PSSVAQAPQY 300 PERALAAKPP SLCLATDAAS AQFSAPAADR QQQQLPPPSP SPSAHMSATA LLQKAAQMGA 360 TSSSSSFLRG LGLDISSSSP ASTSSGQHHH HHHHHHHQEA MQMQFPEGSL QQWPPRLEPE 420 PAPMMSAGLG LGLPYDSTGG PMGLPELMMG QSSLFSAKPA TLDFLGLGMS PTGATTSRGL 480 PVFMQPMGGA VGMARSGTGP PDTFGAGRGA QGKPWERNPS SSPIL

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MEVDTSSATA KSGGAPPPPP PGPPAKKKRA LPGMPDPDAE VIALSPKTLM ATNRFVCEIC  60
NKGFQRDQNL QLHRRGHNLP WKLRQRSGKE VRKRVYVCPE PSCVHHDASR ALGDLTGIKK  120
HFCRKHGEKK WKCDKCSKKY AVQSDWKAHA KTCGSREYRC DCGTLFSRRD SFITHRAFCD  180
ALAEESAKAR APPAEDGSSG AAAPPALPPP PAAPVPLQQL PPAPAPQQHE EPGNDGQQRE  240
IGAAAPEPVV QYTPPAPLMP SPPSVNGANV SASTSSVAAT SQSLLGSMFA PSSVAQAPQY  300
PERALAAKPP SLCLATDAAS AQFSAPAADR QQQQLPPPSP SPSAHMSATA LLQKAAQMGA  360
TSSSSSFLRG LGLDISSSSP ASTSSGQHHH HHHHHHHQEA MQMQFPEGSL QQWPPRLEPE  420
PAPMMSAGLG LGLPYDSTGG PMGLPELMMG QSSLFSAKPA TLDFLGLGMS PTGATTSRGL  480
PVFMQPMGGA VGMARSGTGP PDTFGAGRGA QGKPWERNPS SSPIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	2e-96	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG005810.4