PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG067780.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 287aa MW: 32121.4 Da PI: 8.9728 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.8 | 1.6e-12 | 11 | 35 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3BG067780.9 11 QPECQYYLKTGTCKFGPTCKFHHPR 35 799********************96 PP | |||||||
2 | zf-CCCH | 38.9 | 1.4e-12 | 57 | 81 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3BG067780.9 57 ERECAYYLKTGQCKYGNTCKFNHPE 81 799********************96 PP | |||||||
3 | zf-CCCH | 35.3 | 1.9e-11 | 218 | 243 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3BG067780.9 218 DQPECIYYIKTGDCKFGAVCKFHHPR 243 689*********************96 PP | |||||||
4 | zf-CCCH | 38.4 | 2.1e-12 | 263 | 287 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +++elC+f++r+G+Ck+G +CkF H TRIDC3BG067780.9 263 PGEELCKFYSRYGICKFGVNCKFDH 287 689********************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence |
MKGEYPERVG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGMVQLNTLG YPLRPNEREC 60 AYYLKTGQCK YGNTCKFNHP EIFSAVASSR GSPIYPPVHN SGSTGPHSYT GTMASWTYPR 120 GSFIPSPRWQ SPSNYTPMIV PQGLVQVPNW NSYPGQMVPV SSPESRLQSP GAQQYYGTSR 180 QGEASAGNQG MQSPYRSSSF PAPQYALQRE NVFPERPDQP ECIYYIKTGD CKFGAVCKFH 240 HPRVRSQPPP DCILSPMGLP LRPGEELCKF YSRYGICKFG VNCKFDH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-108 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG067780.9 |