PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG067780.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 391aa MW: 43293 Da PI: 9.0785 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.9 | 1.1e-10 | 30 | 56 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3BG067780.5 30 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 56 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.2 | 2.3e-12 | 77 | 101 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3BG067780.5 77 QPECQYYLKTGTCKFGPTCKFHHPR 101 799********************96 PP | |||||||
3 | zf-CCCH | 38.4 | 2.1e-12 | 123 | 147 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3BG067780.5 123 ERECAYYLKTGQCKYGNTCKFNHPE 147 799********************96 PP | |||||||
4 | zf-CCCH | 34.8 | 2.8e-11 | 284 | 309 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3BG067780.5 284 DQPECIYYIKTGDCKFGAVCKFHHPR 309 689*********************96 PP | |||||||
5 | zf-CCCH | 41.8 | 1.7e-13 | 329 | 355 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3BG067780.5 329 PGEELCKFYSRYGICKFGVNCKFDHPM 355 689**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence |
ISGRSHEGMW QQMAMSSGAT MQSGPYPVRP GEPDCTYYLR TGLCRFGMSC RFNHPQDRNT 60 AIASARMKGE YPERVGQPEC QYYLKTGTCK FGPTCKFHHP REKAGIAGMV QLNTLGYPLR 120 PNERECAYYL KTGQCKYGNT CKFNHPEIFS AVASSRGSPI YPPVHNSGST GPHSYTGTMA 180 SWTYPRGSFI PSPRWQSPSN YTPMIVPQGL VQVPNWNSYP GQMVPVSSPE SRLQSPGAQQ 240 YYGTSRQGEA SAGNQGMQSP YRSSSFPAPQ YALQRENVFP ERPDQPECIY YIKTGDCKFG 300 AVCKFHHPRV RSQPPPDCIL SPMGLPLRPG EELCKFYSRY GICKFGVNCK FDHPMAAPMG 360 VYAYGYSASA SPNAPMARRL LESPSGSAYA S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-145 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG067780.5 |