PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG067780.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 383aa MW: 42469.1 Da PI: 9.0783 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.9 | 1.1e-10 | 22 | 48 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3BG067780.4 22 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 48 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.3 | 2.3e-12 | 69 | 93 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3BG067780.4 69 QPECQYYLKTGTCKFGPTCKFHHPR 93 799********************96 PP | |||||||
3 | zf-CCCH | 38.4 | 2.1e-12 | 115 | 139 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3BG067780.4 115 ERECAYYLKTGQCKYGNTCKFNHPE 139 799********************96 PP | |||||||
4 | zf-CCCH | 34.8 | 2.8e-11 | 276 | 301 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3BG067780.4 276 DQPECIYYIKTGDCKFGAVCKFHHPR 301 689*********************96 PP | |||||||
5 | zf-CCCH | 41.9 | 1.7e-13 | 321 | 347 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3BG067780.4 321 PGEELCKFYSRYGICKFGVNCKFDHPM 347 689**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence |
MWQQMAMSSG ATMQSGPYPV RPGEPDCTYY LRTGLCRFGM SCRFNHPQDR NTAIASARMK 60 GEYPERVGQP ECQYYLKTGT CKFGPTCKFH HPREKAGIAG MVQLNTLGYP LRPNERECAY 120 YLKTGQCKYG NTCKFNHPEI FSAVASSRGS PIYPPVHNSG STGPHSYTGT MASWTYPRGS 180 FIPSPRWQSP SNYTPMIVPQ GLVQVPNWNS YPGQMVPVSS PESRLQSPGA QQYYGTSRQG 240 EASAGNQGMQ SPYRSSSFPA PQYALQRENV FPERPDQPEC IYYIKTGDCK FGAVCKFHHP 300 RVRSQPPPDC ILSPMGLPLR PGEELCKFYS RYGICKFGVN CKFDHPMAAP MGVYAYGYSA 360 SASPNAPMAR RLLESPSGSA YAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-144 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG067780.4 |