PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG067780.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 383aa MW: 42469.1 Da PI: 9.0783

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG067780.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.9	1.1e-10	22	48	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3BG067780.3 22 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 48 5789*********************97 PP
2	zf-CCCH	38.3	2.3e-12	69	93	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3BG067780.3 69 QPECQYYLKTGTCKFGPTCKFHHPR 93 799********************96 PP
3	zf-CCCH	38.4	2.1e-12	115	139	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3BG067780.3 115 ERECAYYLKTGQCKYGNTCKFNHPE 139 799********************96 PP
4	zf-CCCH	34.8	2.8e-11	276	301	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3BG067780.3 276 DQPECIYYIKTGDCKFGAVCKFHHPR 301 689*********************96 PP
5	zf-CCCH	41.9	1.7e-13	321	347	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3BG067780.3 321 PGEELCKFYSRYGICKFGVNCKFDHPM 347 689**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MWQQMAMSSG ATMQSGPYPV RPGEPDCTYY LRTGLCRFGM SCRFNHPQDR NTAIASARMK 60 GEYPERVGQP ECQYYLKTGT CKFGPTCKFH HPREKAGIAG MVQLNTLGYP LRPNERECAY 120 YLKTGQCKYG NTCKFNHPEI FSAVASSRGS PIYPPVHNSG STGPHSYTGT MASWTYPRGS 180 FIPSPRWQSP SNYTPMIVPQ GLVQVPNWNS YPGQMVPVSS PESRLQSPGA QQYYGTSRQG 240 EASAGNQGMQ SPYRSSSFPA PQYALQRENV FPERPDQPEC IYYIKTGDCK FGAVCKFHHP 300 RVRSQPPPDC ILSPMGLPLR PGEELCKFYS RYGICKFGVN CKFDHPMAAP MGVYAYGYSA 360 SASPNAPMAR RLLESPSGSA YAS

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MWQQMAMSSG ATMQSGPYPV RPGEPDCTYY LRTGLCRFGM SCRFNHPQDR NTAIASARMK  60
GEYPERVGQP ECQYYLKTGT CKFGPTCKFH HPREKAGIAG MVQLNTLGYP LRPNERECAY  120
YLKTGQCKYG NTCKFNHPEI FSAVASSRGS PIYPPVHNSG STGPHSYTGT MASWTYPRGS  180
FIPSPRWQSP SNYTPMIVPQ GLVQVPNWNS YPGQMVPVSS PESRLQSPGA QQYYGTSRQG  240
EASAGNQGMQ SPYRSSSFPA PQYALQRENV FPERPDQPEC IYYIKTGDCK FGAVCKFHHP  300
RVRSQPPPDC ILSPMGLPLR PGEELCKFYS RYGICKFGVN CKFDHPMAAP MGVYAYGYSA  360
SASPNAPMAR RLLESPSGSA YAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-144	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG067780.3