PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG067780.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 406aa MW: 45086.2 Da PI: 9.2362 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.8 | 1.2e-10 | 45 | 71 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3BG067780.2 45 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 71 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.2 | 2.4e-12 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3BG067780.2 92 QPECQYYLKTGTCKFGPTCKFHHPR 116 799********************96 PP | |||||||
3 | zf-CCCH | 38.3 | 2.2e-12 | 138 | 162 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3BG067780.2 138 ERECAYYLKTGQCKYGNTCKFNHPE 162 799********************96 PP | |||||||
4 | zf-CCCH | 34.7 | 3e-11 | 299 | 324 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3BG067780.2 299 DQPECIYYIKTGDCKFGAVCKFHHPR 324 689*********************96 PP | |||||||
5 | zf-CCCH | 41.8 | 1.8e-13 | 344 | 370 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3BG067780.2 344 PGEELCKFYSRYGICKFGVNCKFDHPM 370 689**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence |
MVINTGVRGQ THHRKIQDMK VEGMWQQMAM SSGATMQSGP YPVRPGEPDC TYYLRTGLCR 60 FGMSCRFNHP QDRNTAIASA RMKGEYPERV GQPECQYYLK TGTCKFGPTC KFHHPREKAG 120 IAGMVQLNTL GYPLRPNERE CAYYLKTGQC KYGNTCKFNH PEIFSAVASS RGSPIYPPVH 180 NSGSTGPHSY TGTMASWTYP RGSFIPSPRW QSPSNYTPMI VPQGLVQVPN WNSYPGQMVP 240 VSSPESRLQS PGAQQYYGTS RQGEASAGNQ GMQSPYRSSS FPAPQYALQR ENVFPERPDQ 300 PECIYYIKTG DCKFGAVCKF HHPRVRSQPP PDCILSPMGL PLRPGEELCK FYSRYGICKF 360 GVNCKFDHPM AAPMGVYAYG YSASASPNAP MARRLLESPS GSAYAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-145 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG067780.2 |